Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24100 426 / 3e-146 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT2G43820 382 / 2e-129 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT1G05680 379 / 4e-128 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT2G43840 372 / 2e-125 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT1G05675 368 / 6e-124 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 360 / 8e-121 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT2G31790 355 / 8e-119 UDP-Glycosyltransferase superfamily protein (.1) AT1G05560 245 / 4e-76 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT4G15480 243 / 5e-75 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT1G05530 236 / 1e-72 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008742 [exp] 429 / 1e-147 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10014148 [exp] 395 / 3e-134 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10020556 [exp] 381 / 5e-129 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006353 [exp] 379 / 1e-127 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009412 [exp] 374 / 3e-126 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006352 [exp] 362 / 3e-121 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10024486 [exp] 358 / 8e-120 AT1G05680 389 / 4e-132 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10017825 [exp] 355 / 2e-118 AT2G43840 392 / 2e-133 UDP-glycosyltransferase 74 F1 (.1.2) Lus10020559 [exp] 352 / 2e-117 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G071900 [exp] 462 / 7e-161 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.001G389200 [exp] 410 / 5e-140 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.014G175000 [exp] 408 / 2e-139 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.007G140500 [exp] 404 / 5e-138 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032300 [exp] 391 / 7e-133 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G032500 [exp] 391 / 8e-133 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.004G179300 [exp] 390 / 3e-132 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140300 [exp] 388 / 1e-131 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 382 / 2e-129 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032733 [exp] 382 / 2e-129 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10010712 pacid=23148718 polypeptide=Lus10010712 locus=Lus10010712.g ID=Lus10010712.BGIv1.0 annot-version=v1.0 ATGGAGGCAAAAACAAAAACCCAGAAAGCACACGTCTTGATCCTCCCATACCCAAGCCAAGGCCACATAAACCCACTCCTCCAATTCGCCAAACGCCTAG CATCCAAAGGCGGCGGCATCAAAGCCACAATCGCCACCACCCATTACACCGTCGCCTCCATTACCGCCGCCGTCGCCGTCGAGCCCATCTCTGACGGGTT CGACGGAGGCGGGTTCGCTCAGGCCGGAAATGAGCAAGCATTCCTCCAGTCATTCAGGTCGAACGGCTCGAGGACTCTGTCCAAGCTCGTGGAGAAGTAC GAGAGCTCGGAATTCCCCGTCACTTGCATAGTGTATGATTCTTTCTTGCCGTGGGCGCTTGACGTTGCCAAGCAGTATGGAGTTTATGGAGCTGCGTTCT TTACGAATTCGGCTGCGGTTTGTGGGATCTTCTGTCGGGTTAGCCGCGGAGAGGTGGCGTTGGAAATGGCGGCGAAGGAAGGTGGGTTGGATTTCCCTGG TTTGCCGTCGCTGGGGCTGTCGGATTTGCCGAGTTTCTTGAGGTTTCCGGAGAGCTATCCGACTTACTTGGGGATGAAGCTTTGTCAGTATTCTAACTTG GAGGAGGTTGATTGGATTTTTTGTAACTCATTTCAGGAATTGGAGTCTAAGGAAGCAGGAAGTGTGAAAGAGCATTGGCCGGCAAAGCTGATCGGTCCGA TGGTTCCATCATCGTATCTAGACAGTCGTATAGAAGGTGACAACGGGTACGGAGCCAGCCTATGGAAGCCACTCAACGACGAGTGCACGAAGTGGCTGGA AGCAAAGCCGGCCGAATCAGTCGCATTCATCTCATTTGGGAGCATGGTCTCCCTGACAGAAGAACAGACTGCAGAAATCACAGCCGGGTTGGAGGAATCA GGCGTGGAGTTCCTGTGGGTGGTCAGAGATTCAGAGCTAAGCAAGATCCCCAAACGGTTCAGAGAGTCCTTGACTTCTTCTACAAAGGGTCTAATAGTGT CGTGGTGTAACCAGCTGGAAATGCTGGCACACAGGGCCACGGGATGCTTCGTGACACACTGCGGCTGGAACTCAACGCTCGAAGGGCTGAGTCTTGGCGT GCCCATGGTGGCCATGCCGCAGTGGACGGATCAAGTCACGAACGCCAAGTACATCGAGGACGTGTGGAGGGTCGGTGTTAGAGCGAAGGAAGATCGGAAT GGGATTGCTGGAAGAGAGGAGATAGCCAAGTGTTTGAAGGAAGTGATGTTGGAAGGGGATCGGAGCAAGGAAATTAAGGAAGCTGCAAGGAAATGGAGAC GGATGGCTGTGGAGGCAGTGAGCGAAGGAGGGGATTCAGACAAAGAAATCGATAGGTTTGTGAAGCATCTGATGAAGGGCAGGTCCTAG
AA sequence Show only first row Show all	>Lus10010712 pacid=23148718 polypeptide=Lus10010712 locus=Lus10010712.g ID=Lus10010712.BGIv1.0 annot-version=v1.0 MEAKTKTQKAHVLILPYPSQGHINPLLQFAKRLASKGGGIKATIATTHYTVASITAAVAVEPISDGFDGGGFAQAGNEQAFLQSFRSNGSRTLSKLVEKY ESSEFPVTCIVYDSFLPWALDVAKQYGVYGAAFFTNSAAVCGIFCRVSRGEVALEMAAKEGGLDFPGLPSLGLSDLPSFLRFPESYPTYLGMKLCQYSNL EEVDWIFCNSFQELESKEAGSVKEHWPAKLIGPMVPSSYLDSRIEGDNGYGASLWKPLNDECTKWLEAKPAESVAFISFGSMVSLTEEQTAEITAGLEES GVEFLWVVRDSELSKIPKRFRESLTSSTKGLIVSWCNQLEMLAHRATGCFVTHCGWNSTLEGLSLGVPMVAMPQWTDQVTNAKYIEDVWRVGVRAKEDRN GIAGREEIAKCLKEVMLEGDRSKEIKEAARKWRRMAVEAVSEGGDSDKEIDRFVKHLMKGRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24100		UGT74B1	UDP-glucosyl transferase 74B1 ...		Lus10010712 [exp]	0	1
AT4G10950			SGNH hydrolase-type esterase s...		Lus10001532 [exp]	3.0	0.9300
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10009455 [exp]	3.6	0.9507
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023294 [exp]	8.0	0.9379
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	11.6	0.9356
AT4G31380		FLP1	FPF1-like protein 1 (.1)		Lus10040802 [exp]	13.0	0.9190
AT2G40010			Ribosomal protein L10 family p...		Lus10040214 [exp]	13.4	0.9353
AT3G52610			unknown protein		Lus10014215 [exp]	14.5	0.9339
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	16.7	0.9340
AT4G10950			SGNH hydrolase-type esterase s...		Lus10000876 [exp]	17.0	0.9054
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10026680 [exp]	17.0	0.9318

Compare expression of checked genes

Lus10010712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.