Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38840 115 / 2e-32 SAUR-like auxin-responsive protein family (.1) AT2G21200 110 / 7e-31 SAUR-like auxin-responsive protein family (.1) AT5G18080 110 / 7e-31 SAUR24 small auxin up RNA 24, SAUR-like auxin-responsive protein family (.1) AT5G18020 109 / 2e-30 SAUR-like auxin-responsive protein family (.1) AT5G18030 109 / 2e-30 SAUR-like auxin-responsive protein family (.1) AT5G18060 108 / 3e-30 SAUR-like auxin-responsive protein family (.1) AT4G34770 108 / 5e-30 SAUR-like auxin-responsive protein family (.1) AT5G18050 107 / 9e-30 SAUR-like auxin-responsive protein family (.1) AT3G03840 106 / 3e-29 SAUR-like auxin-responsive protein family (.1) AT5G18010 106 / 3e-29 SAUR19, SAUR24 small auxin up RNA 19, SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029199 [exp] 214 / 2e-67 AT5G64950 226 / 1e-70 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 178 / 1e-53 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 175 / 2e-52 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10008999 [exp] 147 / 6e-45 AT4G38840 117 / 7e-36 SAUR-like auxin-responsive protein family (.1) Lus10008995 [exp] 144 / 6e-44 AT4G38840 119 / 2e-36 SAUR-like auxin-responsive protein family (.1) Lus10008991 [exp] 143 / 2e-43 AT4G38840 115 / 4e-35 SAUR-like auxin-responsive protein family (.1) Lus10025909 [exp] 142 / 6e-43 AT4G34770 116 / 3e-35 SAUR-like auxin-responsive protein family (.1) Lus10025911 [exp] 140 / 2e-42 AT4G38840 118 / 4e-36 SAUR-like auxin-responsive protein family (.1) Lus10029198 [exp] 139 / 1e-41 AT4G38840 119 / 2e-36 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G126700 [exp] 127 / 4e-37 AT4G38840 126 / 3e-39 SAUR-like auxin-responsive protein family (.1) Potri.009G126500 [exp] 124 / 5e-36 AT5G18020 124 / 1e-38 SAUR-like auxin-responsive protein family (.1) Potri.009G126300 [exp] 122 / 3e-35 AT5G18060 123 / 2e-38 SAUR-like auxin-responsive protein family (.1) Potri.004G164800 [exp] 117 / 2e-33 AT4G38840 120 / 3e-37 SAUR-like auxin-responsive protein family (.1) Potri.009G126400 [exp] 117 / 2e-33 AT5G18020 119 / 1e-36 SAUR-like auxin-responsive protein family (.1) Potri.004G165200 [exp] 117 / 3e-33 AT5G18020 122 / 6e-38 SAUR-like auxin-responsive protein family (.1) Potri.004G164600 [exp] 112 / 2e-31 AT4G38840 115 / 5e-35 SAUR-like auxin-responsive protein family (.1) Potri.009G126900 [exp] 111 / 3e-31 AT4G38840 131 / 1e-41 SAUR-like auxin-responsive protein family (.1) Potri.004G165450 [exp] 108 / 4e-30 AT4G38840 129 / 2e-40 SAUR-like auxin-responsive protein family (.1) Potri.004G165300 [exp] 107 / 9e-30 AT4G38840 130 / 6e-41 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10010714 pacid=23148720 polypeptide=Lus10010714 locus=Lus10010714.g ID=Lus10010714.BGIv1.0 annot-version=v1.0 ATGGCTATCGGATTGCCAGGTAGCCTAGCCAAACAGATCTTCCGACGGACCGGTTCCGGATCGGGTAAAGGCGGATCTTCGAAATTTCCAGATGTACCAA AGGGATTCTTAGAGTCTTTCAGCATTTCTGAGTTCGGGTTTTCGAGGGAGGAATGTAATGACATGCTCAGAAAGGCTCCTGTGTTGATGAGGCGTGCTGA GGAGAAGTTGAAGTTCGGGATTGATTTCTATTTGAACACAATGAAGCTGACGAGGGAGATGATATGTCGTAATCCTGCGCTGTTGATGTATAGCATGAGG GAAAAAGTGATTCCGAGGTATCGTGTGTTGGAAGTTATGGTGTCGAAGGCGCTGTTGAAGAGTAGGCCGAATTTTGGTACTGTTGTGAGCTTGACGGATG AGAGGTTTGTCGAGAAGTTTGTGTTTCGGTCTGTAGATGATGCCGAGGAACTGTTGATGGTTTACGAAGATTTCATAAAAAAAGTATCATGGCCATCGGA TTTCATAAAAAAAGTATCATGGCTAGCGAAGAAAATTCTCCGACAAACTGGCTCTAGATCGAGCAGAGCATCATCCTCGAGGTTTCAAGATGTGCCAAAG GGGTTCTTAGTGGTGTATGTTGGAGAAGAAACGCACAAGAAGAGATTTGTTGTGCCGGTGTCGTATCTGAGCCAGCCGTCGTTTCAAGATTTGTTGAGCA TGGCTGAGGAAGAATTTGGGTTCGATCATCCAATGGGCGGATTGACCATTCCTTGTAGTGAAGAGACCTTCGTTTCTGCTACTTCAAGTTTGAACAGATC ATGA
AA sequence Show only first row Show all	>Lus10010714 pacid=23148720 polypeptide=Lus10010714 locus=Lus10010714.g ID=Lus10010714.BGIv1.0 annot-version=v1.0 MAIGLPGSLAKQIFRRTGSGSGKGGSSKFPDVPKGFLESFSISEFGFSREECNDMLRKAPVLMRRAEEKLKFGIDFYLNTMKLTREMICRNPALLMYSMR EKVIPRYRVLEVMVSKALLKSRPNFGTVVSLTDERFVEKFVFRSVDDAEELLMVYEDFIKKVSWPSDFIKKVSWLAKKILRQTGSRSSRASSSRFQDVPK GFLVVYVGEETHKKRFVVPVSYLSQPSFQDLLSMAEEEFGFDHPMGGLTIPCSEETFVSATSSLNRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010714 [exp]	0	1
AT4G34770			SAUR-like auxin-responsive pro...		Lus10025909 [exp]	1.0	0.9400
AT4G38840			SAUR-like auxin-responsive pro...		Lus10029198 [exp]	1.7	0.9261
AT5G18050			SAUR-like auxin-responsive pro...		Lus10008994 [exp]	3.2	0.9381
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009000 [exp]	4.5	0.9163
AT3G29030		ATEXP5, ATHEXPA...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10033011 [exp]	4.9	0.8925
AT1G41830		SKS6	SKU5 SIMILAR 6, SKU5-similar 6...		Lus10025107 [exp]	5.1	0.8664
AT5G62850		ATVEX1, SWEET5,...	VEGETATIVE CELL EXPRESSED1, No...		Lus10022226 [exp]	5.5	0.8604
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008996 [exp]	5.5	0.9098
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008999 [exp]	5.7	0.8844
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031824 [exp]	5.7	0.8560

Compare expression of checked genes

Lus10010714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.