Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51760 462 / 3e-161 JR3, IAR3 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) AT5G56660 451 / 1e-156 ILL2 IAA-leucine resistant (ILR)-like 2 (.1) AT1G51780 447 / 4e-155 ILL5 IAA-leucine resistant (ILR)-like gene 5 (.1) AT5G56650 446 / 8e-155 ILL1 IAA-leucine resistant (ILR)-like 1 (.1) AT1G44350 439 / 2e-151 ILL6 IAA-leucine resistant (ILR)-like gene 6 (.1) AT3G02875 419 / 5e-144 ILR1 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) AT5G54140 387 / 2e-131 ILL3 IAA-leucine-resistant (ILR1)-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029200 [exp] 818 / 0 AT5G56660 469 / 8e-164 IAA-leucine resistant (ILR)-like 2 (.1) Lus10030659 [exp] 700 / 0 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 695 / 0 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10037601 [exp] 486 / 4e-170 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10032963 [exp] 451 / 2e-156 AT5G54140 545 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Lus10025668 [exp] 446 / 2e-154 AT1G44350 585 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Lus10006864 [exp] 428 / 7e-148 AT1G51760 586 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10016998 [exp] 426 / 9e-147 AT3G02875 571 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Lus10021321 [exp] 420 / 3e-144 AT3G02875 573 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035900 [exp] 634 / 0 AT1G51760 482 / 1e-168 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.002G082400 [exp] 491 / 7e-172 AT1G44350 609 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.005G178900 [exp] 487 / 4e-170 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1) Potri.003G045200 [exp] 478 / 4e-167 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.016G074100 [exp] 450 / 9e-156 AT3G02875 508 / 1e-178 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.015G004000 [exp] 443 / 2e-153 AT5G54140 520 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.006G207400 [exp] 443 / 2e-153 AT3G02875 584 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.012G007400 [exp] 435 / 1e-150 AT5G54140 548 / 0.0 IAA-leucine-resistant (ILR1)-like 3 (.1) Potri.006G207300 [exp] 431 / 1e-148 AT3G02875 568 / 0.0 IAA-LEUCINE RESISTANT 1, Peptidase M20/M25/M40 family protein (.1) Potri.003G091100 [exp] 51 / 1e-06 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10010715 pacid=23148768 polypeptide=Lus10010715 locus=Lus10010715.g ID=Lus10010715.BGIv1.0 annot-version=v1.0 ATGGCGGGGGCCGGAGCTTTTACGACGGCAGTAGTACTATATCTGCATGCTCTCTCCCTCTTCTTCACCGCCGTCCTCTGCTGCCAACCCGCGGTTCATT CGAGCTGCCCGGTTATGAAATCGGGGAACTTTTCGGTTCGGGACGAGATAGTCGAGCTGGCCAGTGAGGAGTCGACGGTGGATATGATGACAAGAATAAG GCGGCGGATTCACGAGAATCCGGAGCTTGCTTACGAGGAGTACGAGACGAGTGAGCTGATAAGGGAGGAGCTTGACCGGCTTGGGATTCCGTACCGGTGG CCGGTGGTCAAGACTGGAATTGTGGCGACGCTTGGGGACGGCTCGGCGCCGGTTGTGGCTCTCCGGGCTGATAGCTCGGCTCCGGTTGTGGCTCTCCGGG CTGATATGGATGCTCTGCCTATTCAGGAAATGGTGGAATGGGAGCACAAGAGCAAAGTAGATGGGAAAATGCATGCCTGTGGGCATGATGCTCATGTTGC AATGCTTCTTGGTGCTGCAAAGATTCTGCAACAGATGAGACACAAATTGCAGGGAACTGTGGTCCTGATCTTTCAACCGGCAGAGGAGAAAGGGGTCGGA GCGAAAGAAATGATAGCAGAAGGAGCATTGGACAATGTGGAAGCGATTTTCGGAATCCACGTAGCTCATGTTTTTCCGTCAGGCTCTGTTGCATCCAGGC CAGGACAATTCCTTGCTGGATGCGGAAGCTTCAAGGCGAAGATCACCGGGAAAGGTGGCCATGCTGCGATTCCTCAGAACTCCATCGATCCGATCGTTGC AGCTTCTTCATCGGTCATCAGCTTGCAGAACATTGTATCAAGAGAAACCGACCCTCTAGATTCTCAGGTGGTATCTGTTGCGATGATCAATGGAGGGAGC GCGCTCAATTTGATTCCAGATTCGGCCATGATAGCCGGATCATTCAGGGCTTTCAGCAGGGAAACCTTCAAGGCCCTTCGAGAAAGAATCAAAGAGGTGA TTGGAGCACAGGCAGCAGTGCACAGATGCACATCAGAGGTGGATTTCGACGGGGAGGAACACCCAAACATCCCACCAACGATCAACGACGATCGAATCTA CGAGTTTGCAAGGCGAGTCTCGGTAGACCTAGTAGGGGAGTCCAACACAAAGCTATCTCCTAGCTTCATGGGGAGTGAAGATTTTGCATTCTACTTGGAC AAAGTGCCTGGTGTTTTCATGTTTGTAGGCGTTAGGAATTCGGAATTGGGAGCCACATACCCACCTCACAGCCCTTATTTTATCATAGATGAAGATTCCT TCCCTGTAGGTGCAGCTCTACATGCAGCCTTTGCACATTCATATCTTTCAAATTCAAAACCACCAGAACTTTGA
AA sequence Show only first row Show all	>Lus10010715 pacid=23148768 polypeptide=Lus10010715 locus=Lus10010715.g ID=Lus10010715.BGIv1.0 annot-version=v1.0 MAGAGAFTTAVVLYLHALSLFFTAVLCCQPAVHSSCPVMKSGNFSVRDEIVELASEESTVDMMTRIRRRIHENPELAYEEYETSELIREELDRLGIPYRW PVVKTGIVATLGDGSAPVVALRADSSAPVVALRADMDALPIQEMVEWEHKSKVDGKMHACGHDAHVAMLLGAAKILQQMRHKLQGTVVLIFQPAEEKGVG AKEMIAEGALDNVEAIFGIHVAHVFPSGSVASRPGQFLAGCGSFKAKITGKGGHAAIPQNSIDPIVAASSSVISLQNIVSRETDPLDSQVVSVAMINGGS ALNLIPDSAMIAGSFRAFSRETFKALRERIKEVIGAQAAVHRCTSEVDFDGEEHPNIPPTINDDRIYEFARRVSVDLVGESNTKLSPSFMGSEDFAFYLD KVPGVFMFVGVRNSELGATYPPHSPYFIIDEDSFPVGAALHAAFAHSYLSNSKPPEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10010715 [exp]	0	1
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026828 [exp]	1.0	0.8939
AT2G23790			Protein of unknown function (D...		Lus10016305 [exp]	10.3	0.8467
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10010439 [exp]	10.9	0.7841
AT1G67850			Protein of unknown function (D...		Lus10035229 [exp]	12.1	0.8318
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10002363 [exp]	15.6	0.7749
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10004007 [exp]	19.4	0.8102
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10032580 [exp]	22.7	0.7958
AT2G34930			disease resistance family prot...		Lus10033931 [exp]	24.3	0.7708
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10009582 [exp]	24.8	0.8204
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10005382 [exp]	25.5	0.7332

Compare expression of checked genes

Lus10010715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.