Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24110 401 / 8e-141 Peroxidase superfamily protein (.1) AT5G40150 382 / 2e-133 Peroxidase superfamily protein (.1) AT5G47000 382 / 4e-133 Peroxidase superfamily protein (.1) AT3G28200 381 / 4e-133 Peroxidase superfamily protein (.1) AT4G17690 367 / 2e-127 Peroxidase superfamily protein (.1) AT4G37530 283 / 2e-94 Peroxidase superfamily protein (.1.2) AT5G14130 277 / 8e-92 Peroxidase superfamily protein (.1) AT4G37520 274 / 7e-91 Peroxidase superfamily protein (.1.2) AT2G18980 264 / 8e-87 Peroxidase superfamily protein (.1) AT5G67400 262 / 5e-86 RHS19 root hair specific 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029201 [exp] 469 / 3e-169 AT1G24110 288 / 6e-98 Peroxidase superfamily protein (.1) Lus10004234 [exp] 422 / 1e-148 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10042144 [exp] 421 / 1e-148 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10039445 [exp] 393 / 1e-137 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10011079 [exp] 280 / 1e-92 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10012540 [exp] 266 / 2e-87 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10013955 [exp] 260 / 7e-84 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1) Lus10001442 [exp] 253 / 1e-82 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10031664 [exp] 252 / 3e-82 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036100 [exp] 476 / 3e-170 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 427 / 4e-151 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.001G351000 [exp] 395 / 2e-138 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 328 / 5e-112 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.007G053400 [exp] 284 / 1e-94 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.004G052100 [exp] 282 / 9e-94 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.001G329200 [exp] 281 / 1e-93 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.017G064100 [exp] 274 / 6e-91 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.018G089900 [exp] 266 / 1e-87 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.011G062300 [exp] 265 / 2e-86 AT2G34060 434 / 1e-152 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10010716 pacid=23148736 polypeptide=Lus10010716 locus=Lus10010716.g ID=Lus10010716.BGIv1.0 annot-version=v1.0 ATGAAATCGACACACCCCAACCTCCTCCTCCTCCTCCTCGTGACGATTCCCCTAGCACATTCTGAACAGCTCGCGTTCGACTACTATGCCAAAACATGCC CGAAATTCGACGACATTATGAAAGACGCCGTGACAAAGAAACAAATCTCCAATCCGACCACGGCTGCTGCAGTCCTCCGCCTCTTCTTCCACGACTGCAT GGTGGACGGTTGCGATGGGTCCACCCTCGTGGCATCCACCCCGTTCCACAAGAGCGAGCGGGACGCTGACCTCAACCTCAATCTCCCCGGTGATGCCTTC GAAATGGTGGTCCGTTCCAAGACCGAGTTGGAGCTCAAATGCCCGAATGTGGTGTCGTGTGCGGACATTCTATCTGTGGCAACTCGTAACCTCGTGACAA TGGTCGGTGGACCATTCTACCCAGTTCGCCTAGGCCGAAAGGACGGCCTAGTTTCGGATCCTTCCCGGGTAGAGCCCAACATACTCCGCCCCACAATGGC AATTTCTCAGATCATCGGGTTCTTTGTTTCAAGAGGGTTCACTGTTCAAGAAATGGTGACGTTGATGGGAGCGCATACGATCGGGTTCTCACATTGTAGA GAGTTCACTAACCGGCTTTACAATTTCAGCAAGGAGACCCCTACAGATCCATCACTCAACCCGAAATTTGCAGACGGGCTGAAGAAACTGTGTGAAAACT ATACAAAGGACCCGACGATGAGCGCATTCAACGATGTGATGACCCCCGGGAAATTCGACAACATGTATTACCAGAATCTCGAGAAAGGGCTAGGGCTTCT TTCGTCGGATGAAGCTATGTACATGGATCAGAGAACAAAGCCTTTCGTTGAGCTTTATGCGAAGAATGAATCGGCCTTCTTCCAAGCGTTTGCTCAAGCA ATGGAGAAGGTCAGTAACTACAAGGTTAAGACAGGGAAAGATGGAGAGATCAGACATAGGTGTGATCAGATCAACACTGTAAAAATTTAA
AA sequence Show only first row Show all	>Lus10010716 pacid=23148736 polypeptide=Lus10010716 locus=Lus10010716.g ID=Lus10010716.BGIv1.0 annot-version=v1.0 MKSTHPNLLLLLLVTIPLAHSEQLAFDYYAKTCPKFDDIMKDAVTKKQISNPTTAAAVLRLFFHDCMVDGCDGSTLVASTPFHKSERDADLNLNLPGDAF EMVVRSKTELELKCPNVVSCADILSVATRNLVTMVGGPFYPVRLGRKDGLVSDPSRVEPNILRPTMAISQIIGFFVSRGFTVQEMVTLMGAHTIGFSHCR EFTNRLYNFSKETPTDPSLNPKFADGLKKLCENYTKDPTMSAFNDVMTPGKFDNMYYQNLEKGLGLLSSDEAMYMDQRTKPFVELYAKNESAFFQAFAQA MEKVSNYKVKTGKDGEIRHRCDQINTVKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24110			Peroxidase superfamily protein...		Lus10010716 [exp]	0	1
AT1G01440			Protein of unknown function (D...		Lus10001910 [exp]	4.7	0.8203
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10034068 [exp]	5.2	0.7876
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040924 [exp]	8.2	0.7966
AT1G32920			unknown protein		Lus10001526 [exp]	11.7	0.7817
AT1G24110			Peroxidase superfamily protein...		Lus10029201 [exp]	12.0	0.7719
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028366 [exp]	12.0	0.7359
AT1G76070			unknown protein		Lus10021840 [exp]	18.7	0.7793
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10023171 [exp]	21.4	0.7681
AT5G26730			Fasciclin-like arabinogalactan...		Lus10006371 [exp]	24.3	0.6894
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	25.2	0.7786

Compare expression of checked genes

Lus10010716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.