Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24120 550 / 0 ARL1 ARG1-like 1 (.1) AT1G68370 451 / 5e-157 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 450 / 9e-157 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT2G22360 54 / 2e-07 DNAJ heat shock family protein (.1) AT5G48030 54 / 2e-07 GFA2 gametophytic factor 2 (.1) AT4G39960 53 / 2e-07 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G17830 53 / 4e-07 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G03160 52 / 6e-07 ATP58IPK homolog of mamallian P58IPK (.1) AT1G21080 49 / 5e-06 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT3G08910 49 / 5e-06 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029202 [exp] 761 / 0 AT1G24120 616 / 0.0 ARG1-like 1 (.1) Lus10030660 [exp] 595 / 0 AT1G24120 588 / 0.0 ARG1-like 1 (.1) Lus10030827 [exp] 561 / 0 AT1G24120 545 / 0.0 ARG1-like 1 (.1) Lus10005113 [exp] 456 / 5e-159 AT1G68370 688 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10034344 [exp] 428 / 8e-148 AT1G68370 624 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10019928 [exp] 52 / 7e-07 AT5G03160 637 / 0.0 homolog of mamallian P58IPK (.1) Lus10000631 [exp] 52 / 7e-07 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 52 / 1e-06 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10031336 [exp] 52 / 1e-06 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G036200 [exp] 607 / 0 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.008G193500 [exp] 597 / 0 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.008G123200 [exp] 445 / 7e-155 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 438 / 5e-152 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.009G065500 [exp] 57 / 1e-08 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 56 / 5e-08 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G073900 [exp] 55 / 6e-08 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.004G158300 [exp] 52 / 4e-07 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.007G094900 [exp] 52 / 6e-07 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 50 / 2e-06 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10010717 pacid=23148726 polypeptide=Lus10010717 locus=Lus10010717.g ID=Lus10010717.BGIv1.0 annot-version=v1.0 ATGCCGGCGAACAAATCAAAGTCGGAGAAGGAGGATGCCGCTGGGAGGAATCTCCGGAGGGATCCTTATGAGGTCCTCGGCGTGTCGAGGAACTCTTCCG ACCAGGAAATCAAGAGCGCGTACCGTAAAATGGCCCTCAATCAAAAAGGATTTTCCTTTGTTCAGTATTCTGGAAATGGAAAGGTTATTTCATACTTTTT GTCTGGTGGATCTGTGTATTTGATTTCTCAAGATACACCAGGTGATGTGTTAACAGCTAAAGCAGCTAAATTTGGTTTGTGTCTCAGGTACCATCCCGAC AAGAATGCAAATGATCCGGAAGCAGCTGATATGTTCAAAGAAGCTACATTTTCCTACGACATATTGTCTGATCCTGAGAAAAGACGCCAGTTTGATCATG CTGGTTTTGCGGCTGTTGAGGCAGAGAATCAAGATTTGGAGCTGGATCTATCAAGCTTAGGAACTATGAACACTATGTTTGCAGCACTTTTTAGCAAACT TGGTGTGCCCATTAAGACAACTGTATCAGCTAATATCTTGGAGGAAGCACTTAATGGTGCAGTTTCTGTGAGCCCACTTGAACTGGGGCATCCGATATCT CGGAAGGTTGAGAAGCAATCTGCTCACTTCTATTCTGTCAAAATCTCAGAGGAAGACGCAAAAGCTGGTTTTGTTTGCCGAGTGCAGTCAACTGACAAAA GCAAGTTCAAGTTATTGTACTTTGATCAAGAAGACAATCGTGGATTAAGCCTTGCTTTACAGGAGGACAGCGCCAAAGCAGGAAAAGTCACATCTGCCGG AATGTATTTCCTTGGCTTTCCTACTTTCCGGTTGGACCAAACAGTGAACTCGCTTGCGGCTGCCAAGGATGCTGATGCTGCCTTCTTCAAAAGGCTGGAT GGCTTCCAACCATGCGAAATCAATGAATTGAAGGCTGGAACACATGTTTTTGCTGTCTACGGTGACAACTTCTTCAAAAGTATAAGCTACACAATAGAAG CCATTTGTGCTGCACGTTTTAGTGAAGAAAAGGAGAACCTAAGAGCCGTTGAAGCTGAAATTCTTGAGAAGAGGGCAGAAATATCAAAGTTCGAAACTGA ATATAGGGAGGTTTTGGCGCAGTTCACACAAATGACAACCAGATACGCCCAGGAAATGCAAGAGATCGACGAGCTTCTAAAACAAAGGAATGAAATTCAT GCAGCCTACACAGCTGCGCCAGCAATGAAGCGGAGTATGAGTAAAAGTAGGAGCAGAGGCTCCTTCAAAGAGAGCCAAGAAGATGGGCAGCACAAAGAAA AGAAATCATCATCAACAAGAGATAGACCAAAGAAGAAGAAATGGTTCAATATCCACCACTTAAAAGTAGAAAAAAGAAAGGCTTGCTAA
AA sequence Show only first row Show all	>Lus10010717 pacid=23148726 polypeptide=Lus10010717 locus=Lus10010717.g ID=Lus10010717.BGIv1.0 annot-version=v1.0 MPANKSKSEKEDAAGRNLRRDPYEVLGVSRNSSDQEIKSAYRKMALNQKGFSFVQYSGNGKVISYFLSGGSVYLISQDTPGDVLTAKAAKFGLCLRYHPD KNANDPEAADMFKEATFSYDILSDPEKRRQFDHAGFAAVEAENQDLELDLSSLGTMNTMFAALFSKLGVPIKTTVSANILEEALNGAVSVSPLELGHPIS RKVEKQSAHFYSVKISEEDAKAGFVCRVQSTDKSKFKLLYFDQEDNRGLSLALQEDSAKAGKVTSAGMYFLGFPTFRLDQTVNSLAAAKDADAAFFKRLD GFQPCEINELKAGTHVFAVYGDNFFKSISYTIEAICAARFSEEKENLRAVEAEILEKRAEISKFETEYREVLAQFTQMTTRYAQEMQEIDELLKQRNEIH AAYTAAPAMKRSMSKSRSRGSFKESQEDGQHKEKKSSSTRDRPKKKKWFNIHHLKVEKRKAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	0	1
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10029202 [exp]	1.0	0.8805
AT4G24630			DHHC-type zinc finger family p...		Lus10028687 [exp]	3.2	0.7763
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Lus10021092 [exp]	4.0	0.8296
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10009770 [exp]	5.2	0.8288
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	5.9	0.8177
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10025869 [exp]	6.5	0.8152
AT5G25510			Protein phosphatase 2A regulat...		Lus10012116 [exp]	6.7	0.7774
AT5G19390			Rho GTPase activation protein ...		Lus10036047 [exp]	7.5	0.8189
AT1G48320			Thioesterase superfamily prote...		Lus10043043 [exp]	7.5	0.7647
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10033388 [exp]	8.7	0.7646

Compare expression of checked genes

Lus10010717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.