Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14610 83 / 3e-18 DEAD box RNA helicase family protein (.1.2) AT3G06480 75 / 2e-15 DEAD box RNA helicase family protein (.1) AT3G01540 68 / 2e-13 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014553 [exp] 99 / 6e-24 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032133 [exp] 99 / 6e-24 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032135 [exp] 93 / 8e-22 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 72 / 3e-14 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10009474 [exp] 66 / 2e-12 AT3G06480 744 / 0.0 DEAD box RNA helicase family protein (.1) Lus10029206 [exp] 62 / 2e-11 AT1G24130 353 / 5e-119 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347100 [exp] 90 / 1e-20 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.017G071400 [exp] 81 / 1e-17 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 69 / 2e-13 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain
Representative CDS sequence Show only first row Show all	>Lus10010718 pacid=23148725 polypeptide=Lus10010718 locus=Lus10010718.g ID=Lus10010718.BGIv1.0 annot-version=v1.0 ATGCGACTGATCCCCTGCCTGCCGCCATTACCATGCCTCGAACCAACAGATCAAGATTACAATTCATCTTCCCTTTCAACCCAACTCAGCCTCCCTTCTG TTCCTTCCCTCTCCACCTCCTCCGTCCCCGCCGCCGTCTTCCACCGCTGCATCGCCGCCCTCCACACCCATTCCTCCTCTGTATCCTCCCTCGCCCTGTC TCCTGACACCCTCTTCTCCGGCGACAGTGAAATCCTCGCCTGGAATCCAATTCCCATTTCCTCAGCTTCTTCCGACTCCTCCACCATGGTCAAGATCGGC GGCGCAGTGAAATGCTTGGCGGAGCAACGAATTGCCTCAGTTAACACGGATGTTGCTCCAAGATTTACACCGGAGGATCCTACTCTTCCCAAGCCATGGA GAGGCTTTATTGATGTTAAATCTGGTTTCCCTTACTTTTGGAACCCAGAAACTAATGTCAGTCAATGGGTGAGGCCTACTGCTCCCTCTCTGTCTCTTGT GCCTATGAACTCCTCAGTTCAACGTGTCCAAACTGGAACAACTGGTGGAGCTTTGGTAGCTTCTCCTAAAGGACCTGCATCAGCTGAGGCTTACAGGCGT TGGCACAAAATAACTGTAACTGTGAGTTGA
AA sequence Show only first row Show all	>Lus10010718 pacid=23148725 polypeptide=Lus10010718 locus=Lus10010718.g ID=Lus10010718.BGIv1.0 annot-version=v1.0 MRLIPCLPPLPCLEPTDQDYNSSSLSTQLSLPSVPSLSTSSVPAAVFHRCIAALHTHSSSVSSLALSPDTLFSGDSEILAWNPIPISSASSDSSTMVKIG GAVKCLAEQRIASVNTDVAPRFTPEDPTLPKPWRGFIDVKSGFPYFWNPETNVSQWVRPTAPSLSLVPMNSSVQRVQTGTTGGALVASPKGPASAEAYRR WHKITVTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14610			DEAD box RNA helicase family p...		Lus10010718 [exp]	0	1
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025002 [exp]	3.2	0.8778
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035590 [exp]	4.0	0.8525
AT4G21550	B3	HSI2-L2, VAL3	VP1/ABI3-like 3 (.1)		Lus10014169 [exp]	7.3	0.7911
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10022808 [exp]	7.9	0.8600
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	11.6	0.8589
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10000206 [exp]	14.7	0.8529
					Lus10001533 [exp]	14.8	0.8572
AT1G54520			unknown protein		Lus10006109 [exp]	15.9	0.8510
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035648 [exp]	16.9	0.8264
AT4G15610			Uncharacterised protein family...		Lus10033972 [exp]	18.3	0.8328

Compare expression of checked genes

Lus10010718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.