Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70170 296 / 6e-99 MMP matrix metalloproteinase (.1) AT1G59970 206 / 4e-64 Matrixin family protein (.1) AT1G24140 206 / 7e-64 Matrixin family protein (.1) AT4G16640 192 / 1e-58 Matrixin family protein (.1) AT2G45040 162 / 5e-47 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030662 [exp] 325 / 5e-110 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10028955 [exp] 202 / 3e-62 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10007478 [exp] 199 / 4e-61 AT4G16640 345 / 2e-117 Matrixin family protein (.1) Lus10004728 [exp] 192 / 2e-58 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10039464 [exp] 158 / 4e-46 AT1G24140 224 / 3e-71 Matrixin family protein (.1) Lus10005605 [exp] 157 / 8e-46 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10032175 [exp] 154 / 1e-44 AT1G59970 224 / 3e-71 Matrixin family protein (.1) Lus10014512 [exp] 153 / 3e-44 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10035221 [exp] 151 / 2e-43 AT1G24140 216 / 1e-67 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G103900 [exp] 334 / 6e-114 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.012G104600 [exp] 323 / 1e-109 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.001G157500 [exp] 198 / 9e-61 AT2G45040 349 / 2e-119 Matrixin family protein (.1) Potri.013G100400 [exp] 188 / 9e-58 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.003G077400 [exp] 189 / 2e-56 AT2G45040 330 / 1e-110 Matrixin family protein (.1) Potri.014G058200 [exp] 182 / 8e-55 AT2G45040 358 / 3e-123 Matrixin family protein (.1) Potri.013G033200 [exp] 172 / 2e-51 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.008G027700 [exp] 164 / 2e-48 AT1G59970 219 / 5e-69 Matrixin family protein (.1) Potri.008G027975 [exp] 161 / 3e-47 AT1G59970 216 / 4e-68 Matrixin family protein (.1) Potri.019G073400 [exp] 161 / 4e-47 AT1G70170 215 / 2e-67 matrix metalloproteinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10010719 pacid=23148708 polypeptide=Lus10010719 locus=Lus10010719.g ID=Lus10010719.BGIv1.0 annot-version=v1.0 ATGAAGTTCAGATTCCAATTCCTCATCGCCATTGCATCTCTGCTAATCTTACCCATCTCCGCCAGATTCTTCCCCAACATTACTTCAATCCCACCTGGAT TCCCCAACAAGTCCAATCTCACCTCCGCCTGGGACTCCTTCAATAAGCTCACCGGCTGCCACGCCGGCGTCAAGCTCGACGGACTATCCAAGATGAAGCA GTACTTTCACCGATTCGGCTACATCCCCGATTCTCCGGAAAACTTCACCGATCTGTTCGACGGATCCCTCGAATCCGCCGTCAAGACTTACCAGAAGAAC TTCAACCTCAACGTCACCGGCGAGCTAGATGACAAAACCATCCGCCAGATCACCCTGCCCAGATGCGGCAACGCCGACATAGTCAACGGCTCGACAGCAA TGAACTCCGGGAAGTCTGAGTCGGAATTGAACGGCACGACGGCGATTCACTTCCACACTGTCGGGAAGTACACGTTCTTCCCCGGGGAGCCGCGGTGGCC GGCGAGCCGTCGGGATCTTACCTACGCTTTTCTCCCGAACAATCAGCTCAGCCGGCAGGTTAAGGACGTGTTCGCCACCGCGTTTGACCGGTGGTCGGAG GTGGCGTCGTTGACCTTCACGGAGACGGATAACTACCCCACCGCCGACACTCGGTCGACGGCGGTGGATCTCGAGTCGGTGGCGGTTCACGAGATCGGGC ATTTGTTGGGGCTGGGTCATTCGTCGGAGCCCGATGCGATAATGTTCCCGACGATTTCTTCACGGACCAGAAAAGTTGAGCTGGCGCAGGACGATATCGA CGGCGTGCAGCAGCTGTACGGCAGTAACCCGAACTTCAACGGGTCAACCGGGTTGCCGCCGATGCAGGAGAGGGAATCCAGTGGAGCCGGTGATGCGGTT ATCGTGAGGAGGTGGGGCTTCGGTTTGATAATGACCGTTGGATTGTCGTTGTTGTCCGTGTTGTAA
AA sequence Show only first row Show all	>Lus10010719 pacid=23148708 polypeptide=Lus10010719 locus=Lus10010719.g ID=Lus10010719.BGIv1.0 annot-version=v1.0 MKFRFQFLIAIASLLILPISARFFPNITSIPPGFPNKSNLTSAWDSFNKLTGCHAGVKLDGLSKMKQYFHRFGYIPDSPENFTDLFDGSLESAVKTYQKN FNLNVTGELDDKTIRQITLPRCGNADIVNGSTAMNSGKSESELNGTTAIHFHTVGKYTFFPGEPRWPASRRDLTYAFLPNNQLSRQVKDVFATAFDRWSE VASLTFTETDNYPTADTRSTAVDLESVAVHEIGHLLGLGHSSEPDAIMFPTISSRTRKVELAQDDIDGVQQLYGSNPNFNGSTGLPPMQERESSGAGDAV IVRRWGFGLIMTVGLSLLSVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10010719 [exp]	0	1
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10003387 [exp]	1.0	0.9471
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10032277 [exp]	2.0	0.9457
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	4.2	0.9374
AT4G28400			Protein phosphatase 2C family ...		Lus10018618 [exp]	6.9	0.9170
AT4G34150			Calcium-dependent lipid-bindin...		Lus10014088 [exp]	8.5	0.9308
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10017991 [exp]	11.0	0.9088
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10019136 [exp]	11.2	0.9113
AT1G76600			unknown protein		Lus10012442 [exp]	12.7	0.8820
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10001265 [exp]	13.0	0.9017
AT1G30755			Protein of unknown function (D...		Lus10013554 [exp]	13.2	0.9207

Compare expression of checked genes

Lus10010719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.