Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59960 410 / 1e-144 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59950 391 / 5e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37790 282 / 4e-94 AKR4C10 Aldo-keto reductase family 4 member C10, NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37770 268 / 2e-88 ChlAKR, AKR4C9 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT5G62420 267 / 4e-88 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37760 257 / 2e-84 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein AT3G53880 253 / 1e-82 AKR4C11 Aldo-keto reductase family 4 member C11, NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G01670 236 / 3e-76 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G21260 195 / 4e-60 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G21250 194 / 5e-60 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029208 [exp] 668 / 0 AT1G59960 406 / 7e-143 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10030946 [exp] 341 / 7e-117 AT1G59960 317 / 1e-107 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10011056 [exp] 332 / 2e-113 AT1G59960 325 / 8e-111 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10027216 [exp] 272 / 3e-90 AT5G62420 429 / 2e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010885 [exp] 268 / 1e-88 AT2G37770 502 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10031162 [exp] 266 / 8e-88 AT5G62420 431 / 1e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10031739 [exp] 263 / 1e-86 AT5G62420 425 / 2e-150 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010884 [exp] 259 / 4e-85 AT2G37770 484 / 5e-174 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10024353 [exp] 252 / 2e-82 AT2G37770 491 / 1e-176 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193100 [exp] 515 / 0 AT1G59960 420 / 3e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G097000 [exp] 449 / 9e-160 AT1G59960 405 / 2e-142 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G125400 [exp] 268 / 2e-88 AT5G62420 445 / 2e-158 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.016G102032 [exp] 260 / 1e-85 AT2G37770 424 / 2e-150 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.006G090600 [exp] 254 / 2e-83 AT2G37770 503 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102300 [exp] 249 / 3e-81 AT2G37770 398 / 5e-140 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102100 [exp] 242 / 2e-78 AT2G37770 400 / 5e-141 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.017G070600 [exp] 238 / 1e-76 AT2G37770 438 / 6e-156 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.010G036801 [exp] 231 / 3e-76 AT1G59960 187 / 2e-59 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.012G039901 [exp] 208 / 6e-67 AT1G59960 201 / 1e-64 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10010720 pacid=23148745 polypeptide=Lus10010720 locus=Lus10010720.g ID=Lus10010720.BGIv1.0 annot-version=v1.0 ATGGATACGAATCCGGCGACCAGCGTTCCAGAGGTGATACTGAGCTCCAGCGGGCGGAGGATGCCGCTGCTTGGAATGGGCACGGCGACTTCACCTCTGA TTGGATCCGCCGCCACAAAATCCGCCGTTGTCCATGCGATTGAGCTCGGTTACCGCCACTTCGACACGGCCACGCTCTACCAGACGGAGGAGCCGCTGGG CGAAGCCATCGCCGAAGCGATCTCTCTCGGACTGATCAAATCCCGCGACGAGCTCTTCGTCACCTCCAAGCTCTGGTGCAGCGACGCCCACGCCGATCTC GTCCTCCTCGCCCTCCAGAAGAGCCTCCATCATCTTCAGCTGGAGTATCTGGATCTGTATCTGATTCACTGGCCGGTGAGTTCCCGGCCGGGGACGTACG AGTTCCCCATCAAGAAGGAAGATTTCATGGCTATGGATGTCGGAGCGGTTTGGGGTGCGATGGAGGAGTGTCAGAATATCGGGCTGACGAAGAACATTGG TGTCAGCAATTTCACCTGTAAGAAGCTTACGGATCTCCTCGCCATTGCCAAGATCCCACCTGCTGTGAATCAAGTAGAGATAAACCCACTGTGGCAACAA AAGAAGCTGAGGGATTACTGCAAGTCGAATGGGATAGTGCTGAGTGCATACGCTCCACTGGGAGCCAAAGGGACCATGTGGGGAAGCAACAGGGTCCTGG AAAATGAAGTCCTCGGAGAAATCGCCAAGGCCAAAGGGAAAACTGTTGCACAGGTTTGCCTGAGATGGGCGTACGAGCAGGAGGTTTGCGTGGTGGTGAA GAGCTTCAACCAGGAGAGGATGAAGGAGAATCTCGACATCTTCAGCTGGGCATTCTCCGAGGAAGAGAACAAGAAGCTCGCCGAGATTCCTCAAAGTAGA GGATGCTTGGGACAAGATTACATCTCCGACCAAGGTCCCTTTAAGACGATCGAGGAGCTCTGGGATGACGAAATGTGA
AA sequence Show only first row Show all	>Lus10010720 pacid=23148745 polypeptide=Lus10010720 locus=Lus10010720.g ID=Lus10010720.BGIv1.0 annot-version=v1.0 MDTNPATSVPEVILSSSGRRMPLLGMGTATSPLIGSAATKSAVVHAIELGYRHFDTATLYQTEEPLGEAIAEAISLGLIKSRDELFVTSKLWCSDAHADL VLLALQKSLHHLQLEYLDLYLIHWPVSSRPGTYEFPIKKEDFMAMDVGAVWGAMEECQNIGLTKNIGVSNFTCKKLTDLLAIAKIPPAVNQVEINPLWQQ KKLRDYCKSNGIVLSAYAPLGAKGTMWGSNRVLENEVLGEIAKAKGKTVAQVCLRWAYEQEVCVVVKSFNQERMKENLDIFSWAFSEEENKKLAEIPQSR GCLGQDYISDQGPFKTIEELWDDEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10010720 [exp]	0	1
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	1.0	0.8077
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10012974 [exp]	6.0	0.7757
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Lus10038323 [exp]	6.3	0.7737
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	8.1	0.7695
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10039044 [exp]	10.4	0.7791
AT3G50420			Pentatricopeptide repeat (PPR)...		Lus10016773 [exp]	10.8	0.7180
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	18.9	0.7287
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Lus10035653 [exp]	20.3	0.6927
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	21.0	0.7394
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10041399 [exp]	23.5	0.7310

Compare expression of checked genes

Lus10010720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.