Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70150 473 / 9e-168 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029210 [exp] 647 / 0 AT1G70150 429 / 3e-150 zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G037600 [exp] 503 / 2e-179 AT1G70150 447 / 2e-157 zinc ion binding (.1) Potri.011G001800 [exp] 146 / 1e-38 AT4G21890 350 / 3e-117 unknown protein Potri.011G095200 [exp] 46 / 4e-05 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 44 / 0.0002 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF01753 [flax] [poplar] zf-MYND MYND finger
Representative CDS sequence Show only first row Show all	>Lus10010722 pacid=23148742 polypeptide=Lus10010722 locus=Lus10010722.g ID=Lus10010722.BGIv1.0 annot-version=v1.0 ATGGAGTGCTGTGGGAAGGGAACCAGAGGAAGGTGCGTAGGTCCAGCGACGAGACGCTGTGGCGGATGCGGCGCCGTCGCTTATTGCTCCGTCTCCCATC AACTTTCGCATTGGGATTACCATAAGCAAGAGTGTGAGAGGCTGGGGCAGCAAATGAAGCTCGTCGAAGTCTTGAACGATTTCCCTTTCACCTTCTCCGA CGAAGCTACTCTGGAGGTGTTTGAAAAGCGAGAGACTAGGTGTTCCTTCTTGAGCAAAAGAGGCATCCATGGATTGGGAATGTGGGGATATGTTTGCGGA TGTGGGGAATCTCTTGCTATTACTCACCCCACAAGGTTTGAGCACCAAGGTTGGGATCTTCCTGGAGAGCTATGTCCTTGTCATGGGCCAACATCTGTGA AACCAAATGATTTAAACTGTTGGAAGGATTACTATGAGTGGAGGTGCTTACCCCTCCATTCCCCGGTTGCTCTGATTCTTCATTGGCCGCTCACTGTATA TTACGCTACTCGAATTGCTAATGTGGGAATATCAGCTCTTGAGACTAGCAAGCAACTCTGCATACACTATCTCGGGCCTGAAAAGGAGCTTTCACAACTT GCTGTATTTGGGGAACTGAGTGCAATTTTCCCTGATACACGGGTGCATGTAGAGCTAATTGGACCTGCCATTCCGAAATCAAGGGATGGTGAGAAGATCG ATATAGACAACTATGCCTATTGTCGGGATACAGATTGCTCGTGCAGATCTTCCAGAATGAACACTGGCAAGTCACCAGCTGTTACACTGACGTTACGAAG AGGACTTTACCACGATCGCTATAGAGAAATAGCAGAGTATTCCGTTCCTCATATAGTCGTCTCTCCTAATGCTGGCATTGCGGCTTATTCAACTTGGTTA CCCACTATTGAGCTTATAAAGGAGATGAACATTCCAGCGGTATTTTCTGATTACTGCGAAGAAGCCTGTCATCTAGCTGCTGGATGCATAGCCAGTGTGA CGGGTGGTCCTATTCGAATTCCGATTCAACTGAATCCTTTCAGGCAGCCACTGGTGGTAGAAGAAAACCCTCTCTTTGTCCCTTGCTACTCCAATTGCTT CATGTTTGGTATATGA
AA sequence Show only first row Show all	>Lus10010722 pacid=23148742 polypeptide=Lus10010722 locus=Lus10010722.g ID=Lus10010722.BGIv1.0 annot-version=v1.0 MECCGKGTRGRCVGPATRRCGGCGAVAYCSVSHQLSHWDYHKQECERLGQQMKLVEVLNDFPFTFSDEATLEVFEKRETRCSFLSKRGIHGLGMWGYVCG CGESLAITHPTRFEHQGWDLPGELCPCHGPTSVKPNDLNCWKDYYEWRCLPLHSPVALILHWPLTVYYATRIANVGISALETSKQLCIHYLGPEKELSQL AVFGELSAIFPDTRVHVELIGPAIPKSRDGEKIDIDNYAYCRDTDCSCRSSRMNTGKSPAVTLTLRRGLYHDRYREIAEYSVPHIVVSPNAGIAAYSTWL PTIELIKEMNIPAVFSDYCEEACHLAAGCIASVTGGPIRIPIQLNPFRQPLVVEENPLFVPCYSNCFMFGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70150			zinc ion binding (.1)		Lus10010722 [exp]	0	1
AT5G59140			BTB/POZ domain-containing prot...		Lus10016485 [exp]	8.1	0.8224
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10006221 [exp]	12.0	0.7824
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10038766 [exp]	15.4	0.8035
AT3G07180			GPI transamidase component PIG...		Lus10038186 [exp]	35.0	0.7647
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032609 [exp]	37.3	0.7930
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10042680 [exp]	49.0	0.7427
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	50.0	0.7758
AT5G08630			DDT domain-containing protein ...		Lus10029550 [exp]	50.5	0.7546
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10039583 [exp]	50.6	0.7733
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10024296 [exp]	66.9	0.7378

Compare expression of checked genes

Lus10010722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.