Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10470 152 / 1e-45 IBC7, ATRR1, ARR4, MEE7 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) AT1G59940 149 / 9e-45 ARR3 response regulator 3 (.1) AT3G48100 139 / 2e-41 ATRR2, IBC6, ARR5 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) AT5G62920 134 / 2e-39 ARR6 response regulator 6 (.1) AT1G19050 128 / 6e-37 ARR7 response regulator 7 (.1) AT1G74890 122 / 2e-34 ARR15 response regulator 15 (.1) AT3G57040 117 / 3e-32 ATRR4, ARR9 RESPONSE REGULATOR 4, response regulator 9 (.1) AT2G41310 115 / 1e-31 ARR8, ATRR3 RESPONSE REGULATOR 8, response regulator 3 (.1) AT3G56380 110 / 3e-30 ARR17 response regulator 17 (.1) AT2G40670 107 / 2e-29 ARR16 response regulator 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029211 [exp] 319 / 3e-111 AT1G10470 211 / 4e-68 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10030822 [exp] 202 / 1e-64 AT1G59940 201 / 2e-64 response regulator 3 (.1) Lus10030664 [exp] 197 / 2e-62 AT1G10470 206 / 2e-65 maternal effect embryo arrest 7, INDUCED BY CYTOKININ 7, RESPONCE REGULATOR 1, response regulator 4 (.1) Lus10036642 [exp] 158 / 1e-48 AT1G19050 160 / 6e-50 response regulator 7 (.1) Lus10042938 [exp] 155 / 2e-47 AT1G19050 153 / 7e-47 response regulator 7 (.1) Lus10042153 [exp] 150 / 2e-45 AT3G48100 213 / 1e-70 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10004243 [exp] 141 / 9e-42 AT3G48100 220 / 2e-73 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Lus10002750 [exp] 112 / 4e-30 AT3G57040 212 / 4e-69 RESPONSE REGULATOR 4, response regulator 9 (.1) Lus10016334 [exp] 111 / 6e-30 AT3G57040 211 / 5e-69 RESPONSE REGULATOR 4, response regulator 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G037800 [exp] 153 / 7e-46 AT1G59940 202 / 5e-65 response regulator 3 (.1) Potri.015G070000 [exp] 138 / 2e-40 AT3G48100 231 / 1e-77 INDUCED BY CYTOKININ 6, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, response regulator 5 (.1) Potri.003G197466 [exp] 131 / 4e-38 AT2G41310 232 / 5e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.T124806 [exp] 130 / 6e-38 AT2G41310 232 / 6e-78 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.008G193000 [exp] 125 / 4e-35 AT1G59940 198 / 1e-63 response regulator 3 (.1) Potri.001G027000 [exp] 122 / 2e-34 AT2G41310 203 / 2e-66 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.019G058900 [exp] 120 / 2e-34 AT3G56380 223 / 5e-76 response regulator 17 (.1) Potri.006G041100 [exp] 121 / 1e-33 AT3G57040 273 / 4e-93 RESPONSE REGULATOR 4, response regulator 9 (.1) Potri.016G038000 [exp] 120 / 2e-33 AT2G41310 242 / 2e-81 RESPONSE REGULATOR 8, response regulator 3 (.1) Potri.019G133600 [exp] 110 / 2e-30 AT3G56380 183 / 2e-60 response regulator 17 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010723 pacid=23148772 polypeptide=Lus10010723 locus=Lus10010723.g ID=Lus10010723.BGIv1.0 annot-version=v1.0 ATGGCTAGAAACGGCGTCATCGCTTCTCACCGGTGGAGCCTGGACGCCGCCGATGCCGGCATCGGCGGTTTCTCCCCGCCGCCTACTGAGGAAGTTCATG TTCTCGCAGTCGATGATAGTCTTATCGATCGGAAAGTCATCGAGCGCTTGCTCCGGAATTCAGCCTACAAAGTTACCGTTGTTGACAGCGGAATGAGAGC TCTGCAGTTCCTTGGATTGGATGGTGAAGAGAAGAATCGTTCTTCCTTTGGTAACTTTGATGGATCGTCTACTTTTAGTGAGATTCCGGTTGTGATAATG TCGTCGGAGAATGTCGTCACTCGAATCGACCGATGTTTAGAGGAAGGAGCAGAGGATTTCATCGTGAAACCAGTGAAAGCGGCCGACGTCGAACGCCTCC GGGGATACATGACCGCAAGAGAGAAGAATCAGGAATACCAGAGAGTCAACAAGAGAAAGCAGCGAGACAGCTGCGACAGCTGCTCCGATCTCTCCACAGC CTCATCCACGACGACTTCAACGTCCACCTCTCCGTCTTCCTCCCCCTCGGTGTCAGTACCGTCGTCGTCCGTCTCATCGCCGGGATCTCCGTCAGATTCT TTGACTAGAAAGCTGAAAATGAGCAGCAGTTCATCGGAGTGGAATGACGAAGGGAAAGAGAGTCTAACTAGAGGAGAAAACTGA
AA sequence Show only first row Show all	>Lus10010723 pacid=23148772 polypeptide=Lus10010723 locus=Lus10010723.g ID=Lus10010723.BGIv1.0 annot-version=v1.0 MARNGVIASHRWSLDAADAGIGGFSPPPTEEVHVLAVDDSLIDRKVIERLLRNSAYKVTVVDSGMRALQFLGLDGEEKNRSSFGNFDGSSTFSEIPVVIM SSENVVTRIDRCLEEGAEDFIVKPVKAADVERLRGYMTAREKNQEYQRVNKRKQRDSCDSCSDLSTASSTTTSTSTSPSSSPSVSVPSSSVSSPGSPSDS LTRKLKMSSSSSEWNDEGKESLTRGEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10010723 [exp]	0	1
AT1G10470		IBC7, ATRR1, AR...	maternal effect embryo arrest ...		Lus10029211 [exp]	1.0	0.8783
AT1G24470		ATKCR2, KCR2	beta-ketoacyl reductase 2 (.1)		Lus10011396 [exp]	3.5	0.8128
AT5G01820		PKS24, CIPK14, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025245 [exp]	10.8	0.8428
AT5G50160		ATFRO8, FRO8	ferric reduction oxidase 8 (.1...		Lus10019488 [exp]	15.3	0.8352
AT3G52790			peptidoglycan-binding LysM dom...		Lus10027407 [exp]	25.3	0.8380
AT1G08170			Histone superfamily protein (....		Lus10041351 [exp]	25.7	0.8332
AT5G43350		PHT1;1, ATPT1	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10021191 [exp]	30.6	0.8151
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019029 [exp]	31.9	0.8195
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	37.7	0.8161
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10024651 [exp]	40.8	0.8054

Compare expression of checked genes

Lus10010723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.