Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70140 396 / 2e-129 ATFH8 formin 8 (.1) AT1G59910 350 / 6e-110 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 316 / 6e-99 ATFH4, FH4 formin homologue 4 (.1) AT3G25500 226 / 7e-64 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT5G67470 223 / 4e-63 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT3G05470 216 / 8e-61 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G54650 209 / 3e-58 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT2G43800 206 / 2e-57 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 204 / 6e-57 AFH3 formin 3 (.1.2) AT5G48360 161 / 5e-42 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029212 [exp] 694 / 0 AT1G70140 491 / 6e-168 formin 8 (.1) Lus10042154 [exp] 314 / 2e-101 AT1G70140 377 / 1e-123 formin 8 (.1) Lus10004244 [exp] 315 / 1e-100 AT1G70140 396 / 6e-130 formin 8 (.1) Lus10004505 [exp] 234 / 1e-67 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10019298 [exp] 228 / 1e-64 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10029897 [exp] 226 / 2e-64 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10025195 [exp] 226 / 4e-64 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 226 / 4e-64 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10036609 [exp] 220 / 4e-62 AT5G54650 581 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G037900 [exp] 461 / 5e-154 AT1G70140 488 / 4e-162 formin 8 (.1) Potri.008G192900 [exp] 431 / 9e-143 AT1G70140 499 / 2e-166 formin 8 (.1) Potri.015G069800 [exp] 380 / 5e-123 AT1G70140 484 / 3e-160 formin 8 (.1) Potri.007G054900 [exp] 235 / 2e-67 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 234 / 3e-67 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.017G009900 [exp] 232 / 4e-66 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 228 / 1e-64 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.001G416100 [exp] 227 / 2e-64 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.011G131700 [exp] 225 / 8e-64 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.005G026300 [exp] 223 / 5e-63 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [flax] [poplar] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Lus10010724 pacid=23148739 polypeptide=Lus10010724 locus=Lus10010724.g ID=Lus10010724.BGIv1.0 annot-version=v1.0 ATGGCTGCCACGAATCAACCATGGCTCTTCATCCTCCTCTTCCACTCCACAATCCACCTCTCTTCCTCTCAGTCCTTCTCTTCACAAAACCTCGAAGCTT TCTTCCCTTTCTTCGACCCATCTCCAGTTCCCTCTCCCGCTCCTTTTCCGGCGACTGGGAATCTTCTCCCTCCGAGTAATTCCATCCTGCCTCCGAGCGG CGGGGATGATGGAAATAGGAATATTGTTAAGGCTGTTGTGGCGACTGCGGCTAGTACTTTTGCAATAGCGACTCTCCTTTTCTTTTTTGTGACTAGGTAT GTGGTTGCGAGGCGGCGGAAGAAGAATGGTGGAGGCGTTAATGGCGCCGCCGCCGTAGGCGGGGGGGGAGGAGGTGGTGGGGCGCGGGGGCCGGGCCGAG GCAGCAGAGTCGACGGCGATCTAATGGAAGCACTATTCGGAACTGTAGCAACGAACAGGAAATCCCCAAACAGAGAAGAATCAAGTCCGAATTCAACCAC CACTCCAAACAACAACTTCACCAGTCCAAGATCCCAGATCGTGATTCTCGACCCGAGAAAGTCACAGAACATCGCCATCGTCCTCAAATCGATCGCAATC TCCCGCAAGGAGCTTCTCGAATCGCTCACCGACGGCCGCGGAATGGAGGCCCACATCCTCGAGACGCTACTGGCGGACGCAGAGTCTTTCCTCTACCATC TCCTCCGATCGATTCCTTCGGCCTTCACCCGGGCGAACGCCATGCTGTTTAGAGCAAACTACGCCTCCGAGATCGCTCAGTTCAAGGAGTCTCTGCAAAC CCTTGAAATGGGTTGTAAAGAGCTTAGAAACAGAGGACTGTTCGTGAAGCTTCTGGAAGCAATTCTGAAAGCTGGAAATCGGATGAACGCGGGAACTGCG CGAGGAAATGCTCAGGCGTTTAAGCTTAGTTCGCTGACAAAGCTCTCCGATGTTAGGAGCTCCGACGGGAAGACAACCTTGCTCCATTTCGTGGTGGAGG AGGTTGTCAGATCGGAAGGTAAACGTGGAGTTCTGAACCGAAACCGGAGCCTGAGCAGGAATAGTAGCATCAATTCGAATTCGAATAATTCGAATTTGAA CTCCAATGATGACAAGGAGAAAGAGTATATTATGCTCGGATTACCGATCGTGGGAGGATTAAGCGCCGAATTCACCAACGTGAAGAAAGCAGCTCAGATC GACTACGACACGTTTGCATCCACTTGCATCTCGATCGCATCTCGAGCTGCCGAGGTGAAGCAGTGTCTGGTCCAATGCGCAGTCAACGGAGAAGGCGGAC TTTTTTCGAAGGAGATGAAAGGATTTCTCGAGTCTGCCGATAAGGAAATGAGAGTGTTGAGGGAATCACAGAAGGAAGTAATCGACCTCGTGAAGCGAAC GACGGAGTATTATCAACCCGGAGGTTCGAATCCGAATTCAAATTCGAAAGATCAGGGAGGAGCTGATCGGCCGCTTCAGCTTTTCGTCATAATTCGTGAT TTCCTCGGGATGGTCGACAATGTCTGTGTGGAGATAGCTAGGAGTCTACAGAGGAGGAAGAGACCTTCTTCAAGTTCTTCGAATGGATCTTCGTCTCCAA AATCGCCTGCTAAGCTCCCAGTCAGGTTTCCGAACTTGCCGGAGCATTTCCTTAAGGAAAGGAATCCGAGCAGTTCTAGTGAATCGGATGCTGAGTTCTG A
AA sequence Show only first row Show all	>Lus10010724 pacid=23148739 polypeptide=Lus10010724 locus=Lus10010724.g ID=Lus10010724.BGIv1.0 annot-version=v1.0 MAATNQPWLFILLFHSTIHLSSSQSFSSQNLEAFFPFFDPSPVPSPAPFPATGNLLPPSNSILPPSGGDDGNRNIVKAVVATAASTFAIATLLFFFVTRY VVARRRKKNGGGVNGAAAVGGGGGGGGARGPGRGSRVDGDLMEALFGTVATNRKSPNREESSPNSTTTPNNNFTSPRSQIVILDPRKSQNIAIVLKSIAI SRKELLESLTDGRGMEAHILETLLADAESFLYHLLRSIPSAFTRANAMLFRANYASEIAQFKESLQTLEMGCKELRNRGLFVKLLEAILKAGNRMNAGTA RGNAQAFKLSSLTKLSDVRSSDGKTTLLHFVVEEVVRSEGKRGVLNRNRSLSRNSSINSNSNNSNLNSNDDKEKEYIMLGLPIVGGLSAEFTNVKKAAQI DYDTFASTCISIASRAAEVKQCLVQCAVNGEGGLFSKEMKGFLESADKEMRVLRESQKEVIDLVKRTTEYYQPGGSNPNSNSKDQGGADRPLQLFVIIRD FLGMVDNVCVEIARSLQRRKRPSSSSSNGSSSPKSPAKLPVRFPNLPEHFLKERNPSSSSESDAEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70140		ATFH8	formin 8 (.1)		Lus10010724 [exp]	0	1
AT5G39670			Calcium-binding EF-hand family...		Lus10012199 [exp]	3.7	0.8185
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	5.9	0.7816
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10033798 [exp]	14.3	0.7853
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10042798 [exp]	19.1	0.8088
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10006868 [exp]	19.6	0.7724
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10004413 [exp]	21.0	0.7777
AT2G36320			A20/AN1-like zinc finger famil...		Lus10020594 [exp]	22.6	0.7565
AT2G46620			P-loop containing nucleoside t...		Lus10005991 [exp]	23.0	0.7712
AT1G21550			Calcium-binding EF-hand family...		Lus10028657 [exp]	24.1	0.7656
AT3G62260			Protein phosphatase 2C family ...		Lus10009993 [exp]	28.5	0.7355

Compare expression of checked genes

Lus10010724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.