Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24160 139 / 4e-35 unknown protein AT1G70100 133 / 2e-33 unknown protein AT3G27350 85 / 4e-18 unknown protein AT3G26050 87 / 8e-18 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 84 / 7e-17 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G40700 78 / 8e-16 unknown protein AT1G23060 76 / 9e-15 unknown protein AT3G01710 74 / 5e-14 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT4G32330 58 / 9e-09 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G25480 55 / 1e-07 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029213 [exp] 347 / 2e-117 AT1G24160 135 / 2e-36 unknown protein Lus10037054 [exp] 89 / 2e-18 AT3G26050 132 / 9e-33 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10032115 [exp] 83 / 2e-16 AT3G01710 181 / 4e-52 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10014571 [exp] 81 / 9e-16 AT3G01710 100 / 1e-22 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10002952 [exp] 73 / 7e-14 AT1G24160 77 / 1e-15 unknown protein Lus10003514 [exp] 73 / 1e-13 AT1G24160 76 / 2e-14 unknown protein Lus10002915 [exp] 52 / 9e-07 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10016193 [exp] 50 / 3e-06 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029355 [exp] 50 / 3e-06 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038100 [exp] 200 / 3e-57 AT1G70100 196 / 4e-56 unknown protein Potri.008G192800 [exp] 168 / 9e-46 AT1G70100 197 / 6e-57 unknown protein Potri.008G180900 [exp] 94 / 5e-20 AT3G26050 119 / 4e-28 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G053200 [exp] 91 / 5e-19 AT3G26050 113 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.001G336300 [exp] 89 / 2e-18 AT3G27350 124 / 1e-31 unknown protein Potri.008G129300 [exp] 88 / 4e-18 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 88 / 5e-18 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.019G075700 [exp] 81 / 5e-16 AT5G40700 74 / 1e-14 unknown protein Potri.013G101300 [exp] 78 / 6e-15 AT1G24160 71 / 7e-13 unknown protein Potri.006G254400 [exp] 52 / 9e-07 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10010725 pacid=23148733 polypeptide=Lus10010725 locus=Lus10010725.g ID=Lus10010725.BGIv1.0 annot-version=v1.0 ATGGGTGAATCTATAGTTGCTTCCTCCTGGAATGATGGAGAAAAGACAGCTATGGCTGCTGCAAATCCTAGTCTGGAGGTGTCGGTCTCATTTGGCAGAT TTGAGAATGACTCATTGTCTTGGGAGAAATGGTCTACTTTCTCTCCAAACAAGTATTTAGAGGAGGTAGAGAAGTGTGCCACTCCTGGATCTGTAGCTCA GAAGAAGGCCTACTTTGAGGCTCATTACAAGAGGATTGCTGCCAGAAAGGCTGAGTTGTTGTTAGATCAGGAGAAACAACAGCAGTCTGATGATCAGAAC GATCGAGATCCGGTATGCCATGATGATTCTGATGTAGGGTTTGAGCCAGTGATGGGAAAAGCAAGTGCTGAGAATGGTGAAGATACTGAACCACCACAAT TAGCTTCAGTTAAGGAAGTAGAAGTAGAAGTGGAAGAACAACTTGTTAATGGAAGTTTTTCAGAAAGTTCTGAGCTGGACAAGGTGGAAGTGGTGGAACC AGCTGTTTCAGTACAAGGATCAGAGATTCTACCAATTGGGTCTCAAGATGAGGAAGAAAGATCAGAAATTTTACCAATTGGGTCAGAAAAGGTCGAGGAA GAAGAGAGCTCTGCAGCAATAATTAAAGTAGAGGGGAATGGTAAGTTGGATCATAAGATGAAAAGTACTTCTGCAACTAAGAAGCCAAAGGCACAGAAGA AACCATCTCAGAAGGTTACTCCAGTCAGTAAAGTTAAGGATACGCCAATGGCGAAGAGAAAACCAGCATCACCTGCAACTCAAAGGCCTCAAAACTCGAC TCCGAGAGTAGTGAAGCCAGTGTCAGCTACTAGTGCTTTGCCTTCTTCTTCTTCGAGGTTGTTAACAAAGAAGGTTAATGGGATTAATGCAGCACCAAAG AGCAGAAGTCCTCTCACGGTTGAGAAGAAGAGAGTGACTCCGAAATCATTTCATATGTCCATTAATGTGGACACTCCGAAATCTGATCCGCCACCTCGTG CTCCTCCCCTTGCATCGACTGCGAGAAAGTCGTTGATTATGGAGAAAATGGGCGATAAGGACATCGTTAGGCGGGCGTTCAAGACGTTCCAGAGTAGCTA CAACCAGCCTAAGTCGTCGTCTCCTCAGGAAAAGACTTCAGGAGCCAAGCAGGTGCCAACAACAAGTTCGGAAGGCCATGGTTCCATCTCGAAACCTACA CGAAGAGAGAGTGGAGGATCTTACAAAGCAGGCGATGCAGATAAAAGATATGCAAAGGCAGCTCCATCTTCTTTTGGCTTGAAAAGTGATGATAGGGCAG AGAAACGAAAGGAGTTTCTGAAGAAAAAGGAAGAGAAGTCGAGTGCTAAAGAAGCAGAAAGTCAATGTCTTCGATCGAAATCCAAGGATGCAAAAGAGGC AGAGATTAGAAAGCTGAGGCAAAGCCTAAACTTCAAGGCCACACCAATGCCAGGTTTCTACAAGGGACAGAAGGTGACCAAGAGTCCATTAGAGAAGTTC GAGCAACCGACCATGCATTCATCTGCCTTTATAAATCCCATTACTTTCCAGCTATCCCCTGGTTTTCTGGTCCTTGTTCGTCAGGAATTTAATGGAGAAT CCAACTGA
AA sequence Show only first row Show all	>Lus10010725 pacid=23148733 polypeptide=Lus10010725 locus=Lus10010725.g ID=Lus10010725.BGIv1.0 annot-version=v1.0 MGESIVASSWNDGEKTAMAAANPSLEVSVSFGRFENDSLSWEKWSTFSPNKYLEEVEKCATPGSVAQKKAYFEAHYKRIAARKAELLLDQEKQQQSDDQN DRDPVCHDDSDVGFEPVMGKASAENGEDTEPPQLASVKEVEVEVEEQLVNGSFSESSELDKVEVVEPAVSVQGSEILPIGSQDEEERSEILPIGSEKVEE EESSAAIIKVEGNGKLDHKMKSTSATKKPKAQKKPSQKVTPVSKVKDTPMAKRKPASPATQRPQNSTPRVVKPVSATSALPSSSSRLLTKKVNGINAAPK SRSPLTVEKKRVTPKSFHMSINVDTPKSDPPPRAPPLASTARKSLIMEKMGDKDIVRRAFKTFQSSYNQPKSSSPQEKTSGAKQVPTTSSEGHGSISKPT RRESGGSYKAGDADKRYAKAAPSSFGLKSDDRAEKRKEFLKKKEEKSSAKEAESQCLRSKSKDAKEAEIRKLRQSLNFKATPMPGFYKGQKVTKSPLEKF EQPTMHSSAFINPITFQLSPGFLVLVRQEFNGESN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70100			unknown protein		Lus10010725 [exp]	0	1
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10030786 [exp]	2.0	0.8471
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10043235 [exp]	2.4	0.8580
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	5.5	0.8437
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	6.7	0.8420
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10004466 [exp]	6.9	0.8425
AT2G02410			unknown protein		Lus10026272 [exp]	7.3	0.8272
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10011115 [exp]	7.9	0.8379
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10034273 [exp]	10.1	0.8396
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	13.4	0.8271
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10023517 [exp]	14.5	0.8089

Compare expression of checked genes

Lus10010725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.