Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10460 262 / 2e-89 GLP7 germin-like protein 7 (.1) AT5G38960 175 / 6e-55 RmlC-like cupins superfamily protein (.1) AT4G14630 172 / 9e-54 GLP9 germin-like protein 9 (.1) AT3G62020 163 / 2e-50 GLP10 germin-like protein 10 (.1.2) AT5G39160 161 / 1e-49 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 161 / 2e-49 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39130 160 / 3e-49 RmlC-like cupins superfamily protein (.1) AT3G04200 160 / 3e-49 RmlC-like cupins superfamily protein (.1) AT3G05950 159 / 1e-48 RmlC-like cupins superfamily protein (.1) AT5G39120 156 / 1e-47 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029214 [exp] 429 / 7e-155 AT1G10460 261 / 5e-89 germin-like protein 7 (.1) Lus10038441 [exp] 163 / 2e-50 AT5G38940 223 / 5e-74 RmlC-like cupins superfamily protein (.1) Lus10035278 [exp] 160 / 4e-49 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10026962 [exp] 160 / 6e-49 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10006543 [exp] 159 / 2e-48 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10003114 [exp] 159 / 2e-48 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10035279 [exp] 158 / 3e-48 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10000622 [exp] 158 / 3e-48 AT5G39130 307 / 7e-107 RmlC-like cupins superfamily protein (.1) Lus10003116 [exp] 157 / 6e-48 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038200 [exp] 286 / 9e-99 AT1G10460 249 / 4e-84 germin-like protein 7 (.1) Potri.011G162200 [exp] 165 / 3e-51 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.019G026200 [exp] 166 / 4e-51 AT3G05950 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Potri.013G051700 [exp] 165 / 6e-51 AT3G05950 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Potri.013G051600 [exp] 164 / 8e-51 AT3G05950 296 / 1e-102 RmlC-like cupins superfamily protein (.1) Potri.005G001300 [exp] 163 / 4e-50 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2) Potri.019G026400 [exp] 162 / 6e-50 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026500 [exp] 162 / 6e-50 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.001G464500 [exp] 162 / 1e-49 AT5G39190 203 / 2e-65 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.015G068200 [exp] 162 / 1e-49 AT1G18980 247 / 2e-83 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10010726 pacid=23148719 polypeptide=Lus10010726 locus=Lus10010726.g ID=Lus10010726.BGIv1.0 annot-version=v1.0 ATGAAGAAAACCCAATCACTCCATTCATCCTCCTCCATCAAGACCACCCTCTCAATCTTCACCCTTCTATTGGGCCTAGCCAAGCCCGATCTGGACCCGC TCCAGGACTACTGCGTAGCGGACCCGAAACCTCAACAGTTTCGATCCTTATTCATCAACGGAGCTACATGCATCGACCCTAAGCTAGTGGTTGCGTCCCA TTTCGCCACTTCTGCTCTCGGTAAACAAGGCAACACCCGGTCGAACCCTTTCGGGTTCAACGTCACCCTCGCAACCATCGCCAACCTGCCCGGACTCAAC ACGATGGGCCTTACAATGGGCCGCATCGACATCGGTCCAAATGGGCTCGTCCCGCCGCACGCCCACCCACGGGCCTCGGAGGTCACCATTTGCATCAAGG GTAGCCTCTTGGTGGGCTTCGTGGACACCTCGAACAAAGTGTTCACCCAACAATTGAGGGTTGGTGAGTCGTTTGTTTTCCCGAAGGGCCTGATCCATTA TCTTTACAACATGGACTCCCGTAGCCCGGCCCTGGCAATTTCTGGGCTCAGCAGCCAAAACCCGGGGGCCCAAGTTGCTTCCACGGCCACTTTCACTTCC AAACCTCCACTGCCCGACGTCGTTTTGGAGAAGGCTTTTCAAATTACTGGCCAAGATGTAATGAAGATCCGCAAGAATCTTGGAGGATAG
AA sequence Show only first row Show all	>Lus10010726 pacid=23148719 polypeptide=Lus10010726 locus=Lus10010726.g ID=Lus10010726.BGIv1.0 annot-version=v1.0 MKKTQSLHSSSSIKTTLSIFTLLLGLAKPDLDPLQDYCVADPKPQQFRSLFINGATCIDPKLVVASHFATSALGKQGNTRSNPFGFNVTLATIANLPGLN TMGLTMGRIDIGPNGLVPPHAHPRASEVTICIKGSLLVGFVDTSNKVFTQQLRVGESFVFPKGLIHYLYNMDSRSPALAISGLSSQNPGAQVASTATFTS KPPLPDVVLEKAFQITGQDVMKIRKNLGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	0	1
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	1.0	0.9960
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	1.4	0.9953
AT1G10800			unknown protein		Lus10041270 [exp]	2.0	0.9899
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	2.4	0.9917
AT2G44260			Plant protein of unknown funct...		Lus10017580 [exp]	3.6	0.9813
AT1G43790		TED6	tracheary element differentiat...		Lus10029760 [exp]	4.0	0.9843
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036460 [exp]	4.4	0.9732
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	6.0	0.9836
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	6.3	0.9876
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030457 [exp]	6.7	0.9792

Compare expression of checked genes

Lus10010726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.