Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70090 541 / 0 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G24170 527 / 0 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G28340 468 / 4e-166 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT3G62660 440 / 3e-155 GATL7 galacturonosyltransferase-like 7 (.1) AT4G02130 438 / 2e-154 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G02720 423 / 2e-148 GATL5 galacturonosyltransferase 5 (.1.2) AT3G06260 409 / 7e-143 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT3G50760 388 / 5e-135 GATL2 galacturonosyltransferase-like 2 (.1) AT1G13250 378 / 6e-131 GATL3 galacturonosyltransferase-like 3 (.1) AT1G19300 377 / 2e-130 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029215 [exp] 674 / 0 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10013296 [exp] 572 / 0 AT1G70090 534 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10030821 [exp] 566 / 0 AT1G70090 533 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10002440 [exp] 433 / 2e-151 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10032728 [exp] 403 / 2e-140 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10018801 [exp] 401 / 8e-140 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10016301 [exp] 399 / 5e-139 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10012765 [exp] 397 / 4e-138 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10041489 [exp] 393 / 2e-136 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G038300 [exp] 548 / 0 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G192600 [exp] 523 / 0 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.014G125000 [exp] 433 / 3e-152 AT3G62660 596 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.002G200200 [exp] 431 / 2e-151 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.010G129400 [exp] 414 / 6e-145 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.007G031700 [exp] 409 / 6e-143 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.005G128000 [exp] 407 / 2e-142 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1) Potri.008G116900 [exp] 407 / 3e-142 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G018100 [exp] 402 / 2e-140 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.014G040300 [exp] 401 / 8e-140 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10010727 pacid=23148722 polypeptide=Lus10010727 locus=Lus10010727.g ID=Lus10010727.BGIv1.0 annot-version=v1.0 ATGGCAGCCGCCGGAGCAATCCGGTCCGATTTACTGGTCGGTTTATCACTCTTCCTATTTCTTTCATCTTCCTTGTGCCTCGGGATTCGTTCCATTCCGG ACGGAGTAGATTTCTCCTGTCTGAACCGGTTCAACGAGGCTCCGGAATACCGTAACGGAGTCGGGTGCCCGAAAACCACCGGCGGCTCATCATGCGACCC GTCTCTGATCCACATCGCCATGACTCTAGACTCGGAGTATCTCCGGGGATCGATCGCAGCGGTCCATTCGGTTTTGAAGCACGCGTCCTGTCCGGAGAAC GTTTACTTCCACTTCATAGCGGCGGAGTTCGACCCGACGACGCCCCGGACTCTGAGCCGGTTAGTGCGGTCGACTTTCCCGTCGCTCCGGTTCCAAGTCC ACATCTTTCGTGAAGACACCGTCATCAACTTAATCTCGTCTTCAATCCGGCAGGCTTTGGAAAATCCATTAAACTACGCGAGAAACTACCTCGGCGAGCT GCTCGACGTTTGCGTGAAACGGGTCATCTACCTGGACTCGGATCTGGTGGTGGTCGACGACATTCAGAAGCTATGGAGTACTACCCTAACCGGGTCGCGG GTCATCGGAGCTCCGGAGTATTGCCACGCGAACTTCACGAAATACTTCACTCCGGCGCTGTGGTCCGACCCGGTGATGTCCCGGGTTTTCCAGTCTCGAA AGCCTTGCTACTTCAATACAGGGGTGATGGTGATGGATTTGGAGAGGTGGAGGGAAGGAAACTACAGGAAGAAGATCGAGCTGTGGATGGAGATTCAGAG GCAGAGGAGGATATACGATTTGGGTTCTCTGCCGCCGTTTTTGCTCGTGTTCGCCGGAAACGTGGAGGCGATTAACCACCGGTGGAACCAGCACGGATTG GGCGGCGACAATGTGAGAGGAAGCTGTAGATCGTTGCATCCAGGACCGGTGAGCTTGCTGCATTGGAGCGGGAAAGGTAAGCCGTGGGTTAGGCTTGATG AGAGGACTCCTTGCCCGATTGATCACTTGTGGGAGCCGTACGATCTCCACCGGAGCTCCTCTGGTTCAGTGGCCGGAATTTAG
AA sequence Show only first row Show all	>Lus10010727 pacid=23148722 polypeptide=Lus10010727 locus=Lus10010727.g ID=Lus10010727.BGIv1.0 annot-version=v1.0 MAAAGAIRSDLLVGLSLFLFLSSSLCLGIRSIPDGVDFSCLNRFNEAPEYRNGVGCPKTTGGSSCDPSLIHIAMTLDSEYLRGSIAAVHSVLKHASCPEN VYFHFIAAEFDPTTPRTLSRLVRSTFPSLRFQVHIFREDTVINLISSSIRQALENPLNYARNYLGELLDVCVKRVIYLDSDLVVVDDIQKLWSTTLTGSR VIGAPEYCHANFTKYFTPALWSDPVMSRVFQSRKPCYFNTGVMVMDLERWREGNYRKKIELWMEIQRQRRIYDLGSLPPFLLVFAGNVEAINHRWNQHGL GGDNVRGSCRSLHPGPVSLLHWSGKGKPWVRLDERTPCPIDHLWEPYDLHRSSSGSVAGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10010727 [exp]	0	1
AT1G29290			unknown protein		Lus10007309 [exp]	1.0	0.9439
AT1G07160			Protein phosphatase 2C family ...		Lus10026381 [exp]	4.0	0.9393
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10017050 [exp]	4.0	0.9317
AT5G38700			unknown protein		Lus10001456 [exp]	5.2	0.9398
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	5.8	0.9404
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Lus10021370 [exp]	6.2	0.9117
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	7.3	0.9363
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10029215 [exp]	8.2	0.8645
AT5G38700			unknown protein		Lus10002433 [exp]	9.5	0.9386
AT4G34320			Protein of unknown function (D...		Lus10011295 [exp]	9.9	0.9330

Compare expression of checked genes

Lus10010727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.