Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59900 668 / 0 AT-E1 ALPHA, AT-E1ALPHA pyruvate dehydrogenase complex E1 alpha subunit (.1) AT1G24180 647 / 0 IAR4 IAA-CONJUGATE-RESISTANT 4, Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT1G01090 239 / 7e-75 PDH-E1 ALPHA, PDH-E1ALPHA pyruvate dehydrogenase E1 alpha (.1) AT5G09300 150 / 1e-41 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) AT1G21400 147 / 1e-39 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) AT5G34780 95 / 1e-21 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029216 [exp] 739 / 0 AT1G59900 695 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10013295 [exp] 691 / 0 AT1G59900 687 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10030820 [exp] 555 / 0 AT1G59900 546 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10002678 [exp] 238 / 2e-74 AT1G01090 688 / 0.0 pyruvate dehydrogenase E1 alpha (.1) Lus10028648 [exp] 150 / 5e-40 AT1G21400 645 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10018945 [exp] 148 / 8e-39 AT1G21400 644 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1) Lus10030819 [exp] 127 / 3e-36 AT1G59900 124 / 1e-35 pyruvate dehydrogenase complex E1 alpha subunit (.1) Lus10020895 [exp] 135 / 4e-35 AT5G09300 629 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Lus10033480 [exp] 124 / 7e-32 AT5G09300 558 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192500 [exp] 664 / 0 AT1G59900 673 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.010G038400 [exp] 661 / 0 AT1G59900 651 / 0.0 pyruvate dehydrogenase complex E1 alpha subunit (.1) Potri.002G179500 [exp] 244 / 1e-76 AT1G01090 672 / 0.0 pyruvate dehydrogenase E1 alpha (.1) Potri.005G064000 [exp] 154 / 5e-42 AT5G09300 654 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.005G185400 [exp] 140 / 6e-37 AT5G09300 619 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1), Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.2) Potri.002G074900 [exp] 130 / 2e-33 AT1G21400 586 / 0.0 Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component
Representative CDS sequence Show only first row Show all	>Lus10010728 pacid=23148751 polypeptide=Lus10010728 locus=Lus10010728.g ID=Lus10010728.BGIv1.0 annot-version=v1.0 ATGTCGCTATCCCGCCTCACCTCCATCCGATCCACTCCCCTCCTCCGTCCACTTTCCCTCCTCTTCCCCCGCCAAATCTCAACCACCACTGACCCCCTAA CGATCGAGACCTCGATCCCCTTCACCACTCACAAATGCGAACCGCCGTCCCGCGCCGTCGACACCACCTCCGAGGAGCTCATGTCCTTCTTCCGCACCAT GGCCACAATGCGCCGGATGGAGATCGCAGCCGACTCGCTCTACAAGTCCAAGCTCATCCGAGGATTCTGCCACCTGTACGACGGCCAGGAGGCCGTCTGC GTCGGGATGGAGGCTGCAATCAACAAGAAGGACTGCATCATCACCGCCTACAGGGACCACTGCACGTTCCTCGGACGCGGAGGGACTCTCCTCGAGGTGT TCTCCGAGCTCATGGGCCGCCAGGCCGGGTGCTCCAGGGGGAAAGGAGGGTCGATGCATTTGTCGATGCATTTTTATAAGAAGGAGGCTGGATTCTACGG CGGCCATGGGATTGTCGGAGCTCAGGTTCCGTTGGGGTGTGGATTAGCGTTTGCGCAGAAGTATAATAAGGATGAGAATGTGACGTTTGTTCTGTATGGA GATGGTGCTGCCAATCAGGGGCAGTTGTTTGAGGCTCTTAATATGTCTGCTCTTTGGGATCTGCCTATCATCTTGGTTTGCGAGAATAATCATTATGGTA TGGGTACAGCTGAGTGGAGGTCAGCTAAGAGCCCTTCTTACTACAAGCGTGGTGATTATGTTCCCGGATTGAAGGTGGATGGCATGGATGTGCTTGCTGT TAAACAAGCTTGCAAATTTGCAAAGGAGCATGTATTAAAGAATGGACCCATGATGCTCGAAATGGACACGTACAGGTATCATGGTCACTCCATGTCCGAC CCCGGTAGCACCTACCGTACCCGTGATGAGATCTCCGGCGTGAGACAGGAACGTGATCCACTTGAAAGAATTAGGAAGTTGGTACTGGCTCATGACATCG CTACCGAGAAAGAACTAAAGGATATTGAGAAGGAAGTAAGGAAAGAAGTAGACGATGCCATCGCTCTAGCCAAGGAGACCCAGATGCCGGATCCATCTGA ACTCTTCACAAATGTATATGTCAAGGGTTTAGGGACCGAGGCGTACGGACCCGATAGGAAAGAAGTAAGAGCAACACTTCCATAG
AA sequence Show only first row Show all	>Lus10010728 pacid=23148751 polypeptide=Lus10010728 locus=Lus10010728.g ID=Lus10010728.BGIv1.0 annot-version=v1.0 MSLSRLTSIRSTPLLRPLSLLFPRQISTTTDPLTIETSIPFTTHKCEPPSRAVDTTSEELMSFFRTMATMRRMEIAADSLYKSKLIRGFCHLYDGQEAVC VGMEAAINKKDCIITAYRDHCTFLGRGGTLLEVFSELMGRQAGCSRGKGGSMHLSMHFYKKEAGFYGGHGIVGAQVPLGCGLAFAQKYNKDENVTFVLYG DGAANQGQLFEALNMSALWDLPIILVCENNHYGMGTAEWRSAKSPSYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHVLKNGPMMLEMDTYRYHGHSMSD PGSTYRTRDEISGVRQERDPLERIRKLVLAHDIATEKELKDIEKEVRKEVDDAIALAKETQMPDPSELFTNVYVKGLGTEAYGPDRKEVRATLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10010728 [exp]	0	1
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10003971 [exp]	2.4	0.8147
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10020411 [exp]	3.9	0.7820
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10029216 [exp]	4.2	0.8175
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	4.9	0.8247
AT2G37035			unknown protein		Lus10013807 [exp]	9.4	0.7508
AT4G04960			Concanavalin A-like lectin pro...		Lus10015313 [exp]	10.6	0.7991
AT4G01575			serine protease inhibitor, Kaz...		Lus10030166 [exp]	13.0	0.7583
AT2G37035			unknown protein		Lus10026520 [exp]	13.2	0.7598
AT1G36370		SHM7	serine hydroxymethyltransferas...		Lus10019942 [exp]	17.7	0.7755
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10043358 [exp]	18.3	0.7264

Compare expression of checked genes

Lus10010728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.