Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70060 1103 / 0 SNL4 SIN3-like 4 (.1) AT1G24190 1096 / 0 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT5G15020 736 / 0 SNL2 SIN3-like 2 (.1.2) AT3G01320 709 / 0 SNL1 SIN3-like 1 (.1.2) AT1G59890 686 / 0 SNL5 SIN3-like 5 (.1.2.3.4) AT1G10450 628 / 0 SNL6 SIN3-like 6 (.1) AT1G24200 206 / 7e-61 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G70030 169 / 4e-48 Paired amphipathic helix (PAH2) superfamily protein (.1) AT1G24230 128 / 7e-33 Paired amphipathic helix (PAH2) superfamily protein (.1) AT5G35610 114 / 3e-29 Paired amphipathic helix (PAH2) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013293 [exp] 1551 / 0 AT1G70060 1454 / 0.0 SIN3-like 4 (.1) Lus10030817 [exp] 1542 / 0 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10029217 [exp] 1319 / 0 AT1G70060 912 / 0.0 SIN3-like 4 (.1) Lus10032181 [exp] 713 / 0 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10014504 [exp] 707 / 0 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10029218 [exp] 464 / 4e-153 AT1G24190 270 / 4e-81 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10014505 [exp] 219 / 2e-61 AT5G15020 449 / 2e-144 SIN3-like 2 (.1.2) Lus10030816 [exp] 143 / 7e-39 AT1G59890 140 / 8e-39 SIN3-like 5 (.1.2.3.4) Lus10030814 [exp] 134 / 8e-36 AT1G70060 130 / 2e-35 SIN3-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192200 [exp] 1463 / 0 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.010G038700 [exp] 1083 / 0 AT1G70060 1396 / 0.0 SIN3-like 4 (.1) Potri.001G350200 [exp] 1034 / 0 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2) Potri.001G316300 [exp] 75 / 4e-15 AT3G01320 86 / 1e-19 SIN3-like 1 (.1.2) Potri.005G008200 [exp] 51 / 9e-08 AT5G15020 66 / 4e-14 SIN3-like 2 (.1.2) Potri.017G056201 [exp] 0 / 1 AT1G24190 0 / 1 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02671 [flax] [poplar] PAH Paired amphipathic helix repeat PF08295 [flax] [poplar] Sin3_corepress Sin3 family co-repressor
Representative CDS sequence Show only first row Show all	>Lus10010729 pacid=23148740 polypeptide=Lus10010729 locus=Lus10010729.g ID=Lus10010729.BGIv1.0 annot-version=v1.0 ATGAAGAGGTCAAGAGATGAGCTGCACTCGCAGCTTAAACGGCCAATGGTGTCTTCTAGAGGAGAAACTTCTGGACAGCCACAAATGGTGGGAGGAGGAG CAGCAATAGGAGGAGCTACTGCCCAAAAGCTTACTACAAATGATGCATTGGCTTATCTGAAGGCCGTGAGGGAAATATTTGAGGATAAACGGGAAAAATA TGATGAGTTTCTTGAGGTTATGAAAGATTTCAAAGCTCAAAGAATTGATACTGCAGGTGTCATAGCAAGGGTGAAGGACCTCTTTAAAGGACATCGTAAC CTGATTTTGGGTTTTAATACCTTCTTGCCGAAGGGATATGAGATCACTCTACCTCTGGAGGATGAACAAGCTCCACGGACCAAACCAGTTGAATTTGAAG AAGCTATTACTTTTGTCAACAAAATTAAGACTAGATTCGAAGGTGATGATCACGTTTACAAAGCATTTTTAGATATTTTGAACATGTACAGGAAGGAAAA TAAACCCATCAGAGAGGTCTATCAGGAGGTGGCTGCTCTTTTCAAAGACCACCATGATCTGCTTCTGGAGTTCGCTCACTTTTTACCTTATAAATCACCT TCGACTGCAACTCATTATGCTTCGTTAATCAAGAACTCTATTCTGCGTAATGGGAGTTCTGCGATGTGTCAACTGCTTACTGATAAGAAAGAACGAAATC ATCCTGATCGCGATTTCAGTGCTAATCGTCCTGATCTTGACCAAGATAGAGCTCGTATGAGAGCAGATAAAGATCAAACGATGCGAGTTGAAAAAGAAAA AGAGAGAAGGGAAGATAGAGATAGGAGAGGACATGATGATAGAGACTACGAAAATGATGCAAATAATGATTATAGCATGCAACGGTTTCCTCATAGTAGG AAACCTGGTCGTAAGTTGCAAGATTTTGATGTGGAGCATCAAGTTGGTGAAGGTGATGACAACTACGGAATGCATCCCAGTTCATCCACTTATGATGCGA AGAGTGCTGTTAAAAGTGCTTTAAGCCAAGAGCTTGCTTTCTGTGAGAAAGTGAAGGAGAAGTTGCGCTGTCCCAATAATTACCAAGAATTTTTGAGGTG CCTTCATTCTTACACACAAGAAATAATCACACGACCACAGTTACAGTCTTTGGTTGATCGTTTAATTGGAAGATATCCTGATCTTATTGTTGGCTTCACT GACTTTTTGGCACGTTGTGAAAAGAACGGTAATTTTCTCAGATCTACTAAAGCAGAAGACAGGCATAGAGAACGTGTGAGGGTTGATGGGGCTAAAGAAA GGGATAGAGAAGCGGGAGAAAGAGATGGACTTGACAGAAATGTAGCCTTTAGCAATAAAGACTCAGGAAGTCATAAGATGTTCTCGTCTTCTAGCAAGGA TAAGTTTTTGTGGAAACCTGTCAGCGAACTTGACCTATCCAACTGTGATAGTTGTAGTCCAAGTTATAGGCTTCTTCCGAAGAATTATCCCATTCCCATT GCAAGCGGAAAGACTAGGATTGGGGGTCAAGTTCTGAATGACCATTGGGTATCCGTCACTTCGGGAAGTGAAGATTACTCTTTTAAGCACATGCGCAAGA ACCAGTACGAAGAAAGCCTATTCCGATGCGAAGATGACAGGTTTGAGCTGGATATGTTGTTGGAATCTGTAAATGTAACTACCAAGCGTGTGGAAGAATT ATTGGATAAAATAAACAACACCACAACCAAATTGGAGGATCCTATTCGGGTTGAGGACCACCTAACAGCTATAAATCTGAGGTGCATTGAGCGTTTATAT GGGGATCATGGGCTGGATGTGATGGACGTGCTAAGGAAGAACATGTCTCTTGCTTTGCCTGTGATACTGACTCGCTTGAAGCAGAAACAAGAAGAATGGG CAAGGTGCCGTGCAGACTTTAACCAAGTTTGGGCTGAAATCTATGCCAAAAACTATCACAAATCACTTGATCATCGTAGCTTCTACTTCAAGCAGCAGGA TACAAAGAGCTTGAGCACCAAAGCTCTATTGGCAGAAATAAAAGAAATTAGCGAGAAGAAGCACAAAGAAGATGATATGCTTTTAGCCTTTGCTGCTGGA AACAGACGCCCAGTTATACCTAATTTGGAATTTGAGTATCCTGATCCTGATGTCCATGAGGATTTGTATCAGCTAATCAAGTACTCTTGTGGGGAAGTTT GTACAACTGAGCAGTTGGATAAGGTCATGATGATTTGGACAGGTTTCTTAGAACCAATGTTCGGTGTTGCTTCTCGTCAGGGTTCCGAGGACACTGAAGA TGTTGTCAAGGCAACGACTGATATTTCCAAGCATGGAGACAGTGATGGAAGCCTTAACGACGGTGCCACCACTGACAACTCTAAACACATAAATCCTTCT AGAAACACGGAAGATATAACCCAAACTGAGCAATCAAGTTCAACCAGGGTCTGGTTGGATAATGGAATGAAAGAAAATGGTTCTCCTGCCACTGATCTTA TTTCTCGTGGCACTGCTTCATCTAGGCCAAGTAAGGGCACGATTGATGGTGAGGTTGCAGTAGGATCCAGTAAAGAAGTTGTGCTTTCAAAAGAGACTGG TGAAGTTACACCCAAGAATGAGGTTGTCGCTGAGGATCGTAATGCAGAACCAGATACACAAGTTAAAACTGACAGAGAAGAAGGCGAGTTGTCCCCCAAC GGAGATTTTGAGAAGGATAATTTTGAAGTTTATGAAGAATCTGGTTCAGAGGCTACGAACAAAGTGAAAGAGACTGCTCCAAGGAGTCCTTTGCAGGGAC ATAATGTGGAAGACAAAACATGTGGAGAGGTAGCAGGGGAAAACGATGCCGAAGTTGACGATGAAGGCGAAGAAAGTGTTCGTGCTCAAAAGTCATCAGA TGATAGTGATAACGCCTCTGAAAATGCCGATGTTTCTGGAAGTGATTCAGGTGAAGAATCTTTTGGGGAAGAGCATGAAGGTAATGGTGATCATGATGAG AATGGTAACAAGGCTGAGAGCGAAGGAGAGGCTGAAGGAACGGCTGATGCCCATGACGCTAAGGGAGATGGGACAGAACGATTTCTGCACAATATGAAAC CCTTAGCAAAGCATGTCCCACTGGCATTACGTGACCTAGGCAAGGGTTCACGAGTTTTCTATGGAAATGATTCATTCTATTTGCTTTTCAGGCTTCACCA AACTTTGTACGAAAGAATACAATCAGCAAAGATCAACTCATCGTCCGAGGACAGGAAATGGAGAGCTTCAAACAATACAAGTTCTTCTACCGATCTGTTT GCTAGGTTTATGAGTGCACTTTACAATCTACTCGATGGATCTTCCGATAACACAAAATTTGAGGATGACTGCCGGGCTATAATTGGGACACAGTCTTATG TTTTATTTACTTTGGATAAGCTAATATATAAGTTGGTCAAACAGCTTCAAACAATGGCAGCCGATGAGACGGACAGCAAGCTACTTCATTTATATGCTTA TGAAAAATCGAGAAAAGTTGGGAGATTTGTTGACGTTGTTTATCATGAAAACACCCGCATCCTCCTCCACGACGAAAATATATATCGAATTGAATGTACG AGAGGGAAGGAGAAGTCTCCTGCAGAATGGCTTGTCGGCACTCCACCAGGAAAAGGCTCGCCAACGACTCCAACGGTTCCAAAGATGGCTTAA
AA sequence Show only first row Show all	>Lus10010729 pacid=23148740 polypeptide=Lus10010729 locus=Lus10010729.g ID=Lus10010729.BGIv1.0 annot-version=v1.0 MKRSRDELHSQLKRPMVSSRGETSGQPQMVGGGAAIGGATAQKLTTNDALAYLKAVREIFEDKREKYDEFLEVMKDFKAQRIDTAGVIARVKDLFKGHRN LILGFNTFLPKGYEITLPLEDEQAPRTKPVEFEEAITFVNKIKTRFEGDDHVYKAFLDILNMYRKENKPIREVYQEVAALFKDHHDLLLEFAHFLPYKSP STATHYASLIKNSILRNGSSAMCQLLTDKKERNHPDRDFSANRPDLDQDRARMRADKDQTMRVEKEKERREDRDRRGHDDRDYENDANNDYSMQRFPHSR KPGRKLQDFDVEHQVGEGDDNYGMHPSSSTYDAKSAVKSALSQELAFCEKVKEKLRCPNNYQEFLRCLHSYTQEIITRPQLQSLVDRLIGRYPDLIVGFT DFLARCEKNGNFLRSTKAEDRHRERVRVDGAKERDREAGERDGLDRNVAFSNKDSGSHKMFSSSSKDKFLWKPVSELDLSNCDSCSPSYRLLPKNYPIPI ASGKTRIGGQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNTTTKLEDPIRVEDHLTAINLRCIERLY GDHGLDVMDVLRKNMSLALPVILTRLKQKQEEWARCRADFNQVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKHKEDDMLLAFAAG NRRPVIPNLEFEYPDPDVHEDLYQLIKYSCGEVCTTEQLDKVMMIWTGFLEPMFGVASRQGSEDTEDVVKATTDISKHGDSDGSLNDGATTDNSKHINPS RNTEDITQTEQSSSTRVWLDNGMKENGSPATDLISRGTASSRPSKGTIDGEVAVGSSKEVVLSKETGEVTPKNEVVAEDRNAEPDTQVKTDREEGELSPN GDFEKDNFEVYEESGSEATNKVKETAPRSPLQGHNVEDKTCGEVAGENDAEVDDEGEESVRAQKSSDDSDNASENADVSGSDSGEESFGEEHEGNGDHDE NGNKAESEGEAEGTADAHDAKGDGTERFLHNMKPLAKHVPLALRDLGKGSRVFYGNDSFYLLFRLHQTLYERIQSAKINSSSEDRKWRASNNTSSSTDLF ARFMSALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTMAADETDSKLLHLYAYEKSRKVGRFVDVVYHENTRILLHDENIYRIECT RGKEKSPAEWLVGTPPGKGSPTTPTVPKMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10010729 [exp]	0	1
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10029217 [exp]	2.2	0.9518
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	2.2	0.9635
AT4G13970			zinc ion binding (.1)		Lus10003970 [exp]	2.4	0.9506
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	4.9	0.9620
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001415 [exp]	5.2	0.9561
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10008369 [exp]	7.1	0.9383
AT5G58270		ABCB25, ATATM3,...	STARIK 1, ARABIDOPSIS THALIANA...		Lus10019120 [exp]	8.1	0.9128
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Lus10039707 [exp]	9.0	0.9494
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10040472 [exp]	10.0	0.9354
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	10.4	0.9525

Compare expression of checked genes

Lus10010729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.