Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27210 381 / 2e-124 ARM repeat superfamily protein (.1) AT5G62580 289 / 3e-89 ARM repeat superfamily protein (.1) AT1G59850 210 / 1e-60 ARM repeat superfamily protein (.1) AT4G27060 155 / 2e-39 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G50890 133 / 3e-32 ARM repeat superfamily protein (.1) AT2G07170 120 / 3e-28 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036675 [exp] 855 / 0 AT1G27210 353 / 3e-115 ARM repeat superfamily protein (.1) Lus10033129 [exp] 295 / 2e-91 AT5G62580 507 / 8e-174 ARM repeat superfamily protein (.1) Lus10036647 [exp] 292 / 3e-90 AT5G62580 496 / 2e-169 ARM repeat superfamily protein (.1) Lus10027590 [exp] 158 / 1e-40 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10011149 [exp] 128 / 1e-30 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10043053 [exp] 123 / 6e-29 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10040047 [exp] 109 / 1e-24 AT4G27060 801 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10008545 [exp] 91 / 8e-19 AT2G07170 550 / 0.0 ARM repeat superfamily protein (.1) Lus10019616 [exp] 72 / 2e-13 AT4G27060 254 / 2e-78 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192100 [exp] 555 / 0 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1) Potri.010G038900 [exp] 549 / 0 AT1G27210 480 / 9e-163 ARM repeat superfamily protein (.1) Potri.012G074400 [exp] 345 / 1e-110 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 338 / 1e-107 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1) Potri.006G079500 [exp] 162 / 1e-41 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.011G136700 [exp] 144 / 8e-36 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.001G421200 [exp] 144 / 9e-36 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010730 pacid=23148746 polypeptide=Lus10010730 locus=Lus10010730.g ID=Lus10010730.BGIv1.0 annot-version=v1.0 ATGCTCATTTCGCTGACACCTCGCCAGAAAAATCTTCATACCAAGCAACCGCCATCTATCTTTTTCCTCCCCGAGCGTGACCCCCCCTCCGTGCTCCCCC CGCTCCACACCGCCATCCAAAACACCGACTCCTCGTCCAAATCTCTGGTCAGGAAGCAATGTGTAAGTCTGTTGACGCTCCTTTCCAACTCCCACGGGAA CTCGCTCTCTCCTCACCTCTCGAAGATGGTGTCCACGGTGGCGCGTCGACTCCGGGACCCGGACTCCGCCGTCAGATCGGCCTGCGTGGAGGCGACGACG GCGATGTCATCTAGGATCACGGATCCTCCGTTCTCCACGGTGTCGAAGCCGCTGATAGAGATGCTGACGGTGGAGCAAGATCTGAACGCTCAGATCGGAG CGGCGATGTGCCTGGCGGCGGCGATTGAGGCGGCGCCGGAGCCTGGCGTGGAGCAGCTGAAGAAGGTGCTTCCGAGGCTTGCGAAGCTCGTGAAGGGAGA CGGATTCAAAGCGAAAGCTGCATTGTTGAGTGTGATTGGGAATATTGTAGGAGTCGGTGGTGCGGCGAGTAAAGGAGTTTTGGATTGGTTAGTACCGTGT TTGGTTGAGCTTTTGAGCTGTGAGGATTGGGCTGCGAGGAAAGCTGCGGCGGAGGCGTTGGGAAAGGTAGCTGTTGCCGATAAGGAAGCAGCGAAAGATC ACCGAACTTCCTGTTTGAGCTCTCTGGAGAATAGGAGGTTTGATAAGGTCAAAGTTGTTCGAGAGATTATGACCCGTACGCTGGAGTTATGGAAAGATGT TGATGGTGGTTCTGAACAGGAGTTTCCTTCCCGTAATCTCTCCAGATCTTCTTCCGCAGGAGATAATGGTAATGGCGGATACACCAGAAGCTATAACAAC GTTGGCTCTAAAACCCCTCCATTGAGGAAATCTTTCCCACCCAATAGGTCCCCTCCATCAGATGCTTCAGTAGTTGTGACCACTGCCAAGAAACAAAGCC CTGCAAAGAGTAATGACAGCAATTCAAGGCCGGCAATGCCACAGAAATTGGACCACAGGAGAACCTCCGCTTGGAAGGTTGAGATTGCTGTACCACTAGA GAAGAGCTCTGAAGATGACAACAAGATGCGAGAATCAAAGGTACTTCAATCCGGTAGCCCAGAGACTAAGCGGGTGCTGTTCAGCAACAGCCGCGAGGAC AAAGTTGACAAACCTCACAGATTCGGTGGGTTCAGATCTGGGTCAAGGGTGGTACCTTACAACGATGAGGACGATGATCAAGTGTGCTACACCACCAAAG AAGAAGCTGAGTTGGATAATCCTGCTGATGATGTGTTTGAGAATCCCAAAGAGATTGAGGATCTGTCTTTGATACGTGCACAGCTTGTTCAGATTGAAAA CCAGCAGTCCAATCTTTTGGACCTTCTTCAGAGATTCATGGGGAGTTCTCAGAGCGGGATAAATTCTCTGGAGTCACGGGTCCAGGGATTGGAAATGGCA TTGGATGAAATCTCACACGACTTGGCTCTATCGAGCGGAAGGATGATACCCAACACTGAGTTAACCGAGAATAGATGCTGTAAGCTTCCCGGTACAGATT TCTTGAGTTCTAAGCTATGGAGTCGAACAGATGGTCCCTATTCCTCGCCGAGGTTCGCCTCACCAGATGCCATGCAATCTCCAAGCGGACGGTATCTCCC CAATAATGGAAGAAGCTTCCAGCAAAGGTATAACAAATGCGGTGTGGTTGCCAGCTCATTCGAAGACTTCCACATTGCGGCCAGGAACAGTTCCCCACGT CAAACGCCAACTAAGCTACTACTTCAAGTCGATACGAGAAGTCCCAGGGCAGCTATATGA
AA sequence Show only first row Show all	>Lus10010730 pacid=23148746 polypeptide=Lus10010730 locus=Lus10010730.g ID=Lus10010730.BGIv1.0 annot-version=v1.0 MLISLTPRQKNLHTKQPPSIFFLPERDPPSVLPPLHTAIQNTDSSSKSLVRKQCVSLLTLLSNSHGNSLSPHLSKMVSTVARRLRDPDSAVRSACVEATT AMSSRITDPPFSTVSKPLIEMLTVEQDLNAQIGAAMCLAAAIEAAPEPGVEQLKKVLPRLAKLVKGDGFKAKAALLSVIGNIVGVGGAASKGVLDWLVPC LVELLSCEDWAARKAAAEALGKVAVADKEAAKDHRTSCLSSLENRRFDKVKVVREIMTRTLELWKDVDGGSEQEFPSRNLSRSSSAGDNGNGGYTRSYNN VGSKTPPLRKSFPPNRSPPSDASVVVTTAKKQSPAKSNDSNSRPAMPQKLDHRRTSAWKVEIAVPLEKSSEDDNKMRESKVLQSGSPETKRVLFSNSRED KVDKPHRFGGFRSGSRVVPYNDEDDDQVCYTTKEEAELDNPADDVFENPKEIEDLSLIRAQLVQIENQQSNLLDLLQRFMGSSQSGINSLESRVQGLEMA LDEISHDLALSSGRMIPNTELTENRCCKLPGTDFLSSKLWSRTDGPYSSPRFASPDAMQSPSGRYLPNNGRSFQQRYNKCGVVASSFEDFHIAARNSSPR QTPTKLLLQVDTRSPRAAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27210			ARM repeat superfamily protein...		Lus10010730 [exp]	0	1
AT1G27210			ARM repeat superfamily protein...		Lus10036675 [exp]	1.0	0.9069
AT1G04200			unknown protein		Lus10006619 [exp]	3.2	0.9020
AT1G77280			Protein kinase protein with ad...		Lus10000968 [exp]	3.3	0.8510
AT1G28240			Protein of unknown function (D...		Lus10015438 [exp]	3.9	0.8661
AT1G04200			unknown protein		Lus10039377 [exp]	4.5	0.8539
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10037795 [exp]	8.8	0.8767
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10035838 [exp]	15.9	0.8652
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024182 [exp]	16.1	0.8473
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031862 [exp]	17.1	0.8106
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	18.5	0.8678

Compare expression of checked genes

Lus10010730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.