Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27200 525 / 0 Domain of unknown function (DUF23) (.1) AT5G40720 404 / 2e-134 Domain of unknown function (DUF23) (.1) AT3G27330 397 / 7e-128 zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37420 276 / 3e-85 Domain of unknown function (DUF23) (.1) AT5G44670 44 / 0.0003 Domain of unknown function (DUF23) (.1) AT2G33570 43 / 0.0006 Domain of unknown function (DUF23) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036676 [exp] 928 / 0 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1) Lus10030815 [exp] 704 / 0 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10013291 [exp] 700 / 0 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10032118 [exp] 400 / 9e-133 AT3G27330 570 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10014568 [exp] 400 / 9e-133 AT3G27330 573 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013221 [exp] 312 / 6e-99 AT4G37420 469 / 9e-160 Domain of unknown function (DUF23) (.1) Lus10016022 [exp] 290 / 4e-91 AT4G37420 488 / 6e-168 Domain of unknown function (DUF23) (.1) Lus10012255 [exp] 259 / 2e-78 AT4G37420 437 / 2e-147 Domain of unknown function (DUF23) (.1) Lus10030740 [exp] 155 / 1e-40 AT4G37420 292 / 3e-92 Domain of unknown function (DUF23) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G192000 [exp] 589 / 0 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1) Potri.010G039000 [exp] 571 / 0 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.001G336766 [exp] 414 / 1e-138 AT3G27330 637 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.005G252100 [exp] 303 / 4e-95 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1) Potri.003G156600 [exp] 43 / 0.0007 AT5G44670 598 / 0.0 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10010731 pacid=23148764 polypeptide=Lus10010731 locus=Lus10010731.g ID=Lus10010731.BGIv1.0 annot-version=v1.0 ATGGACTCCGATCACCAGCGGAGTAAGCGGAAGAGACTCAACAGAACAAACGAATTCAACCTCGTCATCTCATTCAGGTCTCTCACTCTCTGCATCTCTT TCTTCCTCTTCATCCTCCTCCACTTCTCCTTCTCAGATCACTCCCTCTTCCGGCCCGCAATCCTCCGGGTCACGGGTCTGATCCGACTCCACCCCAACCG CCTCACACAGCCCGACCCGCCCATTCCCCCTCAACCGCTCATCGAAAGCCGAATCCTCTTACCGGACTATCTCCTCCTCATCTTATCCAACAAACTCCGC CGTGGCGAATCCCTCGACTGCGTCTACCACCATCCGTTGACTTCTTCCGACGACGGTCAAATCCTAGTCAGACCCGCGATTTCCGCCGACGACTACCAGG AGAGCAAGTCAATCGTCAGATGCGAGCTTCCCCCACCGGGGAACTACTCCGCTGCAGCAGTCGATCTGCACCGCCTGCGAAAGCTGGCGAATCGGACTGC GGAGGAGTCGTACTACGACGGAGGGAAGCTGGTTTACGAAGCGATTTTGGATTGGGACTCGGTTGTTGTTCTAGCGAAAGGACTGAATCTCAAGCCGAGA AAGGAAGCTGATCCATCCGAATTCAGATGCCATTTCGGTCTGACCGGTTTCAACCAAAGGTCCGACCGGTCGTTCGTGATCACTACTGAAGCTACTGCAG CTGCTCAGGAAGTTGTTCGTTGCTTGCTTCCGAGAAGTATCCGGATTAGCAACAATGGAAAGCTAGCCGAAGGAATCAGAGTCACCATCAGCCATGTCAG TGAATCTAATTCCGTGGCAATGCCATCGGTGGCGAAAGTTTACAACCCGAAATCATTGGACATTCGATTTGATCAGAAGAAGAAGTATGAGATTTGTGCT TGTACAATGATGTGGAACCAGGCGGCATTCCTCAAAGAATGGGTGACGTACCATGCCTGGCTCGGCGTGGAACGATGGTTCATCTACGACAACGATAGTG ATGATGGTATACAGGACATTATCGAAGAGCTCGAATCATACAATGTCACGAGACATGTATGGCCATGGCCTAAATCACAAGAAGCAGGGTTCTCGCATTG TGCATTGCGAGCCAAGTACGAATGCGATTGGGTAGGGTTCTTCGACGTAGACGAGTTCTTCTACTTCCCTCGTTACTACGATTCATACCCGACCCCACCG GGGCGAAACTCGTTACGAGCATTGGTGTCGAATTACACAGATTCGCCAATCATAGCGGAGGTCAGAACGACTTGTCGTAGCTTCGGACCATCAGGGCTAA CGAAAGCTCCGCAGCAAGGGGTGACCATGGGATATACATGTAGGCTTCAGGCACCGGAGAGGCACAAATCGTTTGTTCGTCCTGAGTTGTTGGATTCGAC CCTTTTGAACATAATACATCACTTCAAGTTGAAGGAAGGGTACGGGAGTGTCAACGTGGGCGAAACTACTGCTGTGATTAACCATTACAAGTACCAGGTT TGGGATAGTTTCAAGGCCAAGTTTTTCAGGAGGGTATCTACTTATGTTGCGAACTGGCGAGACGATCATAACAAAGGGTCGAAGGATCGAGCTCCCGGGT TGGGGACCGAGGCTGTCGAGCCCGAGGATTGGCGGCTGAGATTCTGCGAGGTTTGGGATACTGGGTTGAAGGACTTTGTGCTTGATACATTTGCTGATGT TGCCACTGGGTTCCTTCCTTGGGAGGACAAGTCTTCTGGAATTTGA
AA sequence Show only first row Show all	>Lus10010731 pacid=23148764 polypeptide=Lus10010731 locus=Lus10010731.g ID=Lus10010731.BGIv1.0 annot-version=v1.0 MDSDHQRSKRKRLNRTNEFNLVISFRSLTLCISFFLFILLHFSFSDHSLFRPAILRVTGLIRLHPNRLTQPDPPIPPQPLIESRILLPDYLLLILSNKLR RGESLDCVYHHPLTSSDDGQILVRPAISADDYQESKSIVRCELPPPGNYSAAAVDLHRLRKLANRTAEESYYDGGKLVYEAILDWDSVVVLAKGLNLKPR KEADPSEFRCHFGLTGFNQRSDRSFVITTEATAAAQEVVRCLLPRSIRISNNGKLAEGIRVTISHVSESNSVAMPSVAKVYNPKSLDIRFDQKKKYEICA CTMMWNQAAFLKEWVTYHAWLGVERWFIYDNDSDDGIQDIIEELESYNVTRHVWPWPKSQEAGFSHCALRAKYECDWVGFFDVDEFFYFPRYYDSYPTPP GRNSLRALVSNYTDSPIIAEVRTTCRSFGPSGLTKAPQQGVTMGYTCRLQAPERHKSFVRPELLDSTLLNIIHHFKLKEGYGSVNVGETTAVINHYKYQV WDSFKAKFFRRVSTYVANWRDDHNKGSKDRAPGLGTEAVEPEDWRLRFCEVWDTGLKDFVLDTFADVATGFLPWEDKSSGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27200			Domain of unknown function (DU...		Lus10010731 [exp]	0	1
AT1G27200			Domain of unknown function (DU...		Lus10036676 [exp]	2.6	0.8156
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10042757 [exp]	5.7	0.7865
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10025195 [exp]	10.2	0.7808
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10015549 [exp]	11.8	0.7550
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	12.5	0.7391
AT2G43180			Phosphoenolpyruvate carboxylas...		Lus10025529 [exp]	17.0	0.7539
AT1G05170			Galactosyltransferase family p...		Lus10021538 [exp]	17.3	0.7680
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10009165 [exp]	21.0	0.7232
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	21.6	0.7589
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10031934 [exp]	24.0	0.7241

Compare expression of checked genes

Lus10010731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.