Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59840 246 / 3e-81 CCB4 cofactor assembly of complex C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036677 [exp] 353 / 1e-123 AT1G59840 331 / 1e-114 cofactor assembly of complex C (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G191900 [exp] 260 / 7e-87 AT1G59840 352 / 2e-122 cofactor assembly of complex C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF11152 [flax] [poplar] CCB2_CCB4 Cofactor assembly of complex C subunit B, CCB2/CCB4
Representative CDS sequence Show only first row Show all	>Lus10010732 pacid=23148730 polypeptide=Lus10010732 locus=Lus10010732.g ID=Lus10010732.BGIv1.0 annot-version=v1.0 ATGGTAGCGGGAATTCTCCTCCACAGTGCCACTCCTTGGAACTTTAGTTCCCACCGGCACCGGCGCCTACCACCTCGACATGTTCGAGCTTCCACCTCGA ATTCGCAGAAAATCTACGAAGGACTGAAGCCGAAGGGAGATTTCGTACCTGACTTGGTGTCCAGCAACGACGAAGCGTTCAGAAGCTTGCCGATATACGT CGGAGGTGCTTCTCTCGTGTCCGTCCTCGTTAATCGCGCAGTTTCCGGCATAGCTCCCGTTGCCGACGCTAGCAGTTCTCAATCAAGAGCGGATTTATTG ACACTCGGATTGGCAGTAACCAGTATATTGACTGGTTTGGTATGGCTGACTATCAAACCAAAGTCTATCTCAGTGGTGGATCCACAAGGTGTGCAATGTC GGATGATATCGCCTGGCCTACCAGACCCAGTAGTTGCAGAGTTGTTATGGGTATGGGAGTCTCTATCATCGGCAACATGCTGCAGGTCTCTAGTAGCTGT TTATGATCGTAGCTGTATTTTCCAAATTGGAGTCGCAGCAGAGTCTCCTGATGGTGAAGCACAGTCCGTGGATGCTGCTATGTTGGCCAAAGGATCAGTT TATGCAGTGATCTTGCAGCCTCTCGGAGACAAAGGCATTCTGATAATTGGAGGTGACATGATTAGAGGCTTTACAAATGCTGACCAGGGATGGATTTCTT ACCTTGGAGAAAAACTGGACGCAACAATGGCAAAACATGCGGCGAGCCAGGACACAATCTGA
AA sequence Show only first row Show all	>Lus10010732 pacid=23148730 polypeptide=Lus10010732 locus=Lus10010732.g ID=Lus10010732.BGIv1.0 annot-version=v1.0 MVAGILLHSATPWNFSSHRHRRLPPRHVRASTSNSQKIYEGLKPKGDFVPDLVSSNDEAFRSLPIYVGGASLVSVLVNRAVSGIAPVADASSSQSRADLL TLGLAVTSILTGLVWLTIKPKSISVVDPQGVQCRMISPGLPDPVVAELLWVWESLSSATCCRSLVAVYDRSCIFQIGVAAESPDGEAQSVDAAMLAKGSV YAVILQPLGDKGILIIGGDMIRGFTNADQGWISYLGEKLDATMAKHAASQDTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10010732 [exp]	0	1
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012466 [exp]	1.0	0.8823
AT5G46090			Protein of unknown function (D...		Lus10013971 [exp]	5.0	0.8084
					Lus10021139 [exp]	7.5	0.8462
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10011775 [exp]	8.5	0.8194
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10016365 [exp]	8.9	0.7906
AT1G21150			Mitochondrial transcription te...		Lus10039174 [exp]	9.0	0.8372
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10003838 [exp]	11.0	0.7846
AT1G45110			Tetrapyrrole (Corrin/Porphyrin...		Lus10024288 [exp]	12.6	0.7991
					Lus10040805 [exp]	14.3	0.7696
					Lus10010327 [exp]	14.5	0.7442

Compare expression of checked genes

Lus10010732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.