Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69980 150 / 2e-44 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036679 [exp] 303 / 4e-104 AT1G69980 180 / 1e-57 unknown protein Lus10009191 [exp] 229 / 5e-75 ND / Lus10029192 [exp] 224 / 2e-73 ND / Lus10012669 [exp] 211 / 1e-67 ND / Lus10010593 [exp] 184 / 3e-58 ND / Lus10033972 [exp] 182 / 1e-56 AT4G15610 46 / 3e-06 Uncharacterised protein family (UPF0497) (.1) Lus10010252 [exp] 180 / 1e-54 ND / Lus10034512 [exp] 170 / 3e-53 ND / Lus10025380 [exp] 182 / 7e-52 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G039466 [exp] 161 / 2e-48 AT1G69980 156 / 4e-48 unknown protein Potri.008G191700 [exp] 159 / 7e-48 AT1G69980 167 / 1e-52 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010734 pacid=23148755 polypeptide=Lus10010734 locus=Lus10010734.g ID=Lus10010734.BGIv1.0 annot-version=v1.0 ATGTCTTCAAGCAAGTCCAGCGAGAATGTTATGAACAAGTTTCGCCGCCCCGATGAGTCAAAGGATTTGTTCACCTACTTTGGAGAAGAAGTGAAGTGTG ATTGCGGATTTCGTGCAGCGAGACTAATGACACTGAAGTTCGATAAATACTTCAATTGTCCTTTCTATAAGTGTAGGTTTGAGAAGAAGTTGGAGGTGGT GTTGGCTGAGAACTCGGTGAGGCACGAGATGAGAGCTACAATGGAATCGAAGCTTGTTGATAATGATGTTGAGATTGAAGCCGTTCGTGCTGAGCTGGCA CATGATCTTTTCGAATGGCAACGTGAGAGGATAGGCATCATACGGTCAAAGGATAGGTACATGGAGGCTCTCACTGAAGAGTTGAAGGAGGTAAATATGA AGTTTAGAAGCGGGAGCAATGGCAGAGTCCGGCGAAGAGTTTTGCTCGGATTCAAGGAAACGCCGAGCGGTAGTAACGTTACCTTCAATTGCGCTCCTTC AGGCGCCTGCGTTCCCTGCCAGTACTCAGAGAAGAGTGAAGTGAAGTACAGATGCAGCGAGACTGGATATCGTATCCCGTTGAAATGTAAGGAGATCAAA GACGGTGTGAAACTTGAAAAGCAAGGAAAATCGAAAAAGAGTCGATCTGTTATGGAAGCATCTTCGGAGGATGGAGTTCAGGAGACGTCAAATGGAGGTA GAAAGTTAGAAGAGGATCCAGCAAAACCAAACGGTGTATCAAATTCACAGGCTTACATCACTTACCGAAGTTGCATACCACCTGTTGAGGAAGAGAAGGT TTCAGTTCTTGGTTTTGAGGGGATCGTGTTGTTCTTGTTGGCAGTAAGTGGTTCAGTGGTCTACTTCCGGAAGAAGCAGACATCGACAATGCCAGGAGCC GGAGGAGGGGCCGGTAGGATCCAAATGAACTCCAGCTTGCTTCTGTAG
AA sequence Show only first row Show all	>Lus10010734 pacid=23148755 polypeptide=Lus10010734 locus=Lus10010734.g ID=Lus10010734.BGIv1.0 annot-version=v1.0 MSSSKSSENVMNKFRRPDESKDLFTYFGEEVKCDCGFRAARLMTLKFDKYFNCPFYKCRFEKKLEVVLAENSVRHEMRATMESKLVDNDVEIEAVRAELA HDLFEWQRERIGIIRSKDRYMEALTEELKEVNMKFRSGSNGRVRRRVLLGFKETPSGSNVTFNCAPSGACVPCQYSEKSEVKYRCSETGYRIPLKCKEIK DGVKLEKQGKSKKSRSVMEASSEDGVQETSNGGRKLEEDPAKPNGVSNSQAYITYRSCIPPVEEEKVSVLGFEGIVLFLLAVSGSVVYFRKKQTSTMPGA GGGAGRIQMNSSLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69980			unknown protein		Lus10010734 [exp]	0	1
AT1G69980			unknown protein		Lus10036679 [exp]	1.7	0.8860
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	2.8	0.8771
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010063 [exp]	3.9	0.8654
AT2G43760			molybdopterin biosynthesis Moa...		Lus10026805 [exp]	6.0	0.8634
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10036125 [exp]	6.3	0.8600
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Lus10014846 [exp]	6.9	0.8211
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10015542 [exp]	7.7	0.8367
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10016977 [exp]	8.0	0.8343
AT2G44360			unknown protein		Lus10012711 [exp]	8.7	0.8345
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10040307 [exp]	8.8	0.8462

Compare expression of checked genes

Lus10010734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.