Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13050 271 / 5e-91 5-FCL 5-formyltetrahydrofolate cycloligase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036681 [exp] 337 / 1e-117 AT5G13050 213 / 3e-69 5-formyltetrahydrofolate cycloligase (.1.2) Lus10004254 [exp] 262 / 7e-87 AT5G13050 296 / 1e-100 5-formyltetrahydrofolate cycloligase (.1.2) Lus10042162 [exp] 260 / 2e-85 AT5G13050 297 / 4e-100 5-formyltetrahydrofolate cycloligase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G072800 [exp] 265 / 4e-88 AT5G13050 309 / 6e-106 5-formyltetrahydrofolate cycloligase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01812 [flax] [poplar] 5-FTHF_cyc-lig 5-formyltetrahydrofolate cyclo-ligase family
Representative CDS sequence Show only first row Show all	>Lus10010736 pacid=23148756 polypeptide=Lus10010736 locus=Lus10010736.g ID=Lus10010736.BGIv1.0 annot-version=v1.0 ATGAACGCCATTGATTTCTATCCCAACATCACCATGCCTCCTCGCCCCTCCAAATCCGCCGTAGGAAGGCTGATCACCACCGTCAATCAGCTGTTTTCGT CATCGTTTACTCAGCCGCGCACGGTGGCGTCAATTTCGTCTCCCAAATCGTGCCTTCCTCCTTTCTCCGCCGTCACTATGAGCACCGACGCCGCGGCGGC GGCGAATGCCGGCGACCTGGAGGCAGTGTTTCGAGAGAAGCGATCTCTTAGATCCCAAATACGCAAGGCTCTCAAGGAGATGGACCCGGCTGAGCGAGCT CGTCAAGATGAGGCGATTCAGGGGATTGTGTTGGAAGCGCCGTGGTTCAAGGCTAGCAAGAGCTTGTGTGCTTATATAAGCTGTCCTTCTCTACGAGAAG TTGATACGACGAGAATTGTCTCAGAAGCTCTGGTTAATCCGTACGAAGGGAATAGGAAAAGGGTGTATCTTCCACGGGTAGAAGACAGGAATAGCAACAT GAAAATGCTGAGGGTATCCGACGTGGATGACCTGATCTTAAACTCGATGAACATATTGGAGCCTTCTTTACTAGATTCGGATGGGGATCAACGTGAAGAT GTCCTACTGGCAAGGGAGCCACTTCACCTCATCATTATACCTGGTCTTGCATTTGACGGAACTGGAAGAAGATTAGGACGTAGTGGGGGTTACTATGACG TCTTCCTGAAGAAGTACCAGTCCCTTGCAAAGGATATGAACTGGAAGCCTCCCTTACATGTTGCATTGGCATACTCGGTTCAGATCACAGAGGAAGGATC TGTACCTATTACCCCAGATGATGTTCCAGTGGATGGCATCGTCTCCCCTTCTGGTTTCGTTCCCATCAGTCCTGCAGCTCGCTCGCACTAG
AA sequence Show only first row Show all	>Lus10010736 pacid=23148756 polypeptide=Lus10010736 locus=Lus10010736.g ID=Lus10010736.BGIv1.0 annot-version=v1.0 MNAIDFYPNITMPPRPSKSAVGRLITTVNQLFSSSFTQPRTVASISSPKSCLPPFSAVTMSTDAAAAANAGDLEAVFREKRSLRSQIRKALKEMDPAERA RQDEAIQGIVLEAPWFKASKSLCAYISCPSLREVDTTRIVSEALVNPYEGNRKRVYLPRVEDRNSNMKMLRVSDVDDLILNSMNILEPSLLDSDGDQRED VLLAREPLHLIIIPGLAFDGTGRRLGRSGGYYDVFLKKYQSLAKDMNWKPPLHVALAYSVQITEEGSVPITPDDVPVDGIVSPSGFVPISPAARSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Lus10010736 [exp]	0	1
AT2G03350			Protein of unknown function, D...		Lus10030420 [exp]	6.0	0.7477
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027986 [exp]	7.2	0.7869
AT1G34160			Tetratricopeptide repeat (TPR)...		Lus10004197 [exp]	7.7	0.7520
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10037212 [exp]	8.5	0.7393
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Lus10032565 [exp]	10.2	0.7458
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10028012 [exp]	14.4	0.6630
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028837 [exp]	14.5	0.7011
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	15.7	0.7407
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10028971 [exp]	17.4	0.7407
AT2G20770		GCL2	GCR2-like 2 (.1)		Lus10033701 [exp]	20.2	0.7390

Compare expression of checked genes

Lus10010736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.