Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59820 828 / 0 ALA3 aminophospholipid ATPase 3 (.1) AT1G26130 414 / 9e-131 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT1G72700 405 / 3e-127 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 403 / 1e-126 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 401 / 1e-125 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 391 / 4e-122 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 390 / 1e-121 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 389 / 4e-121 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT3G13900 384 / 2e-119 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G27870 358 / 4e-110 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030809 [exp] 1087 / 0 AT1G59820 2006 / 0.0 aminophospholipid ATPase 3 (.1) Lus10013286 [exp] 1035 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1) Lus10036682 [exp] 775 / 0 AT1G59820 1990 / 0.0 aminophospholipid ATPase 3 (.1) Lus10019152 [exp] 416 / 2e-131 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 404 / 6e-128 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 395 / 3e-123 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 389 / 4e-121 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 388 / 7e-121 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 382 / 2e-118 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G191400 [exp] 773 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.010G039900 [exp] 690 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G111200 [exp] 399 / 4e-125 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 397 / 2e-124 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 392 / 2e-122 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 391 / 3e-122 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 381 / 2e-118 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 346 / 9e-106 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 347 / 3e-105 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G246200 [exp] 264 / 1e-75 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010737 pacid=23148707 polypeptide=Lus10010737 locus=Lus10010737.g ID=Lus10010737.BGIv1.0 annot-version=v1.0 ATGCCCCATGCAGTACGTGAAAAAGGGTTAAACTTTGATGATTCTAGGATCATGCGAGGGGCTTGGAGGAATGAGTCTAATCCTGATATATGCAAGAAAT TTTTCAGATGCCTCGCGGTATGCCATACTGTACTCACGGAAGGCGAAGAGTCCCCTGACAAGGTCACCTACCAAGCTGCATCTCCCGACGAGGCTGCTCT TGTTACTGCTGCAAAGAATTTTGGATTCTTCTTCTACAGGCGGACACCGACTATGATCTATGTTCGTGAATCTCATGTAGAGAAGATGGAGACCATTTCG GATATTCCTTACGAGATTTTGAATGTTTTGGAATTCAACAGCACGAGAAAGCGCCAGTCTGTGGTTTGTAGGTACCCAGATGGCAGACTCGTATTGTACT GCAAGGGTGCAGATACTGTAATTTATGAAAGATTGGCTGATGGAAACGATGATCTTAAGATGATAACTCGGGAACAATTGGAACAATTTGGATCAGCTGG ATTGCGTACTCTCTGCCTTACCTATAAAGATTTACACCCAGAAACATATGAAAGCTGGAATGAAAAGTTTATCCAAGCTAAATCTTCTCTGAGAGATCGC GAAAAGAAGCTAGATGAGGACAAGTTGGAAACTGCAATAACTATTGCTTATGCTTGCAACTTGATTAACAACCAGATGAAACAATTTATCATAAGTTCCG AAACTGATGTGATAAGAGAAGTGGAAGAGAAGGGTGACCAGGTAGAAATTGCACGATTTATGAAGGAAGAAGTCAAGAGAGAGCTCACAAGGTGTCTCGA AGAAGCACAACACTCTTTATGCACTCTACCTCGACCAAAGTTGGCGCTTATTATAGATGGAAAGTGTTTGATGTATGCATTGGACCGAAGCTTACGTGTG ATGCTGCTTAATTTGTGTCTGAACTGCAGTTCAGTGGTTTGTTGTCGAGTTTCTCCTTTGCAGAAAGCTCAGGTTACAAGCCTGGTAAAGAAAGGTGCCC GGAAGATAACGCTTAGTATTGGGGATGGTGCTAATGATGTTAGCATGATTCAAGCTGCTCATATAGGTGTTGGGATAAGCGGATTGGAGGGTATGCAAGC AGTCATGGCTAGTGATTTCGCGATTGCTCAGTTTCGATATCTCACAGATTTACTTCTTCTACATGGACGGTGGTCGTACCTCAGGATATGCAAGGATGTG AGTTCGGCATTGTCCAAGAAGTACCCTGAACTGTACAAGGAGGGAATAAGAAACATGTTCTTCAAATGGCGAGTTGTGTGGAGTTGGGCGTTTTTCTCCG TCTACCAGTCTCTGGTCTTCTATACCTTCGTCACCCTTTCCGGTGCAAGTGGTAAAAATTCGTCAGGAAGGATGTTCGAACTGTGGGATATTAGCACAAT GGCGTTCACTTGTGTTGTAATCACTGTCAATTTACGGCTTCTCATGATGTGCAATTCGATCACAAGATGGCGTTACATTAGCGTCGGAGGAAGTATTCTG GCATGGTTCGTGTTCATCCTTGTATATTCACTCTTACGGGAGGATGTTCTTTACGTCATTTATGTGCTGATGGGTACATTCTATTTCTACCTCACAATTA TTCTTGTGCCCATCGTTGCTCTTCTTGGAGACTTCATCTATCAAGGGGTGGAGAGGTGGTTCTTCCCGTACGATTATCAGGTGGTTCAAGAAATCCACAG GAACTATCCCGACGACAGCTCAAGTTCTGGACTACTGGAGATCGAGAACCGTCTCACCCCACAAGAGGATAGAAGCTACGCCGTAGCTCAACTACCAATG GAGCTATCCAAACACACGGCTTCGCTTTCGATTCGCCCGGTTACGAGTCATTTTTCGCCGCCCAGCTTGGTATACATGCTCCCCACAAGGCATGGGATGT CGCCAAAAGAGCGAGCATGCGGGGTAAACACAAGGCATCAAAGAAACATTAAATATTTAGGTTTCGTGTAG
AA sequence Show only first row Show all	>Lus10010737 pacid=23148707 polypeptide=Lus10010737 locus=Lus10010737.g ID=Lus10010737.BGIv1.0 annot-version=v1.0 MPHAVREKGLNFDDSRIMRGAWRNESNPDICKKFFRCLAVCHTVLTEGEESPDKVTYQAASPDEAALVTAAKNFGFFFYRRTPTMIYVRESHVEKMETIS DIPYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADTVIYERLADGNDDLKMITREQLEQFGSAGLRTLCLTYKDLHPETYESWNEKFIQAKSSLRDR EKKLDEDKLETAITIAYACNLINNQMKQFIISSETDVIREVEEKGDQVEIARFMKEEVKRELTRCLEEAQHSLCTLPRPKLALIIDGKCLMYALDRSLRV MLLNLCLNCSSVVCCRVSPLQKAQVTSLVKKGARKITLSIGDGANDVSMIQAAHIGVGISGLEGMQAVMASDFAIAQFRYLTDLLLLHGRWSYLRICKDV SSALSKKYPELYKEGIRNMFFKWRVVWSWAFFSVYQSLVFYTFVTLSGASGKNSSGRMFELWDISTMAFTCVVITVNLRLLMMCNSITRWRYISVGGSIL AWFVFILVYSLLREDVLYVIYVLMGTFYFYLTIILVPIVALLGDFIYQGVERWFFPYDYQVVQEIHRNYPDDSSSSGLLEIENRLTPQEDRSYAVAQLPM ELSKHTASLSIRPVTSHFSPPSLVYMLPTRHGMSPKERACGVNTRHQRNIKYLGFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10010737 [exp]	0	1
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10036963 [exp]	2.4	0.8523
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10012235 [exp]	5.3	0.8492
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10006776 [exp]	5.7	0.8539
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10043093 [exp]	7.1	0.7819
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10032424 [exp]	9.2	0.8595
AT5G17680			disease resistance protein (TI...		Lus10043227 [exp]	9.9	0.8381
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10006777 [exp]	13.4	0.8461
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	13.7	0.8306
AT2G48060			unknown protein		Lus10029972 [exp]	19.3	0.8051
AT5G58610			PHD finger transcription facto...		Lus10025386 [exp]	19.7	0.8054

Compare expression of checked genes

Lus10010737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.