Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38030 392 / 3e-131 Rhamnogalacturonate lyase family protein (.1) AT4G37950 389 / 8e-130 Rhamnogalacturonate lyase family protein (.1) AT2G22620 381 / 9e-128 Rhamnogalacturonate lyase family protein (.1.2) AT4G24430 366 / 3e-121 Rhamnogalacturonate lyase family protein (.1) AT1G09910 359 / 3e-118 Rhamnogalacturonate lyase family protein (.1) AT1G09890 353 / 8e-117 Rhamnogalacturonate lyase family protein (.1) AT1G09880 331 / 5e-108 Rhamnogalacturonate lyase family protein (.1) AT1G65210 170 / 3e-50 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012720 [exp] 498 / 3e-172 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10039627 [exp] 407 / 2e-137 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10029552 [exp] 398 / 4e-135 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10004281 [exp] 382 / 6e-127 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10010739 [exp] 368 / 1e-126 AT4G24430 298 / 1e-96 Rhamnogalacturonate lyase family protein (.1) Lus10019231 [exp] 358 / 4e-117 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10028212 [exp] 346 / 2e-113 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005979 [exp] 332 / 3e-107 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10023106 [exp] 335 / 6e-107 AT2G22620 611 / 0.0 Rhamnogalacturonate lyase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G004500 [exp] 406 / 2e-136 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.006G218500 [exp] 389 / 2e-129 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.002G110000 [exp] 370 / 6e-123 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 360 / 7e-119 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 357 / 3e-117 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 349 / 1e-114 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.005G151500 [exp] 343 / 1e-111 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.011G006200 [exp] 319 / 5e-103 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10010738 pacid=23148770 polypeptide=Lus10010738 locus=Lus10010738.g ID=Lus10010738.BGIv1.0 annot-version=v1.0 ATGGCCGTAACCGACGAAATCCAGTTGGTAATGCCGACGGAAGATGATCGAAGAGCTGGAACGCCACTGGCGTATAAAGAAGCCGTGAAGTTAACAAATC CAGTCTCTAACTCCACTTGGAAAGATCAGGTTGACGACAAATATGAATACACCGTAGAAAAAAAAGACCTGAAGTTGAAAGGTTGGATTTCTGACGGCAG TAAAATAGGATTTTGGATACTTGCTCCTAGTGACGAATACATGAATGGAGGACCTAAGAAAAACGATCTTACTTGTCATTGCGGCCCCACTTGCATCGTG GTTTTTACTAGCATACACACATTTGGGTTGGATTTGGTTACGGAATATAGAAATGGAGAGCCATGGAAGAAAGTATTTGGTCCTGTTATGATTTATCTAA ATTCTGATGGAGATCGTGCAACTCTCTGGCAAAATGCAAAATCACAGTTGGAGAAAGAAGTACAAATGTGGCCATACGATTTTGTTCAGCATGAAGACTA TCTACCTGCAACTAAACGAGGAACTGTTTCAGGCCAATTGTTTGTGGATGACAATTATGTTCCTGGTGTTGTTGGGAGCTTTAGATATTCTCAGCTTATC ACTGTTAAAGAAGGAGATGATATCAAACTTGGTCGGATTATATTTGAGTCTCCAAGAAGTGGTCCTACATTATGGCAAATCGGCATTCCTGATCGTTCAG CTAATGACTTTTTTATTCCAGACCCAAATCCCCGGTATAGACAATATGGATTGTGGGATCGTTACGCCGAGTTATACCCTACTAATGATGTTGTTTTTGA AGTTGGGAAAAGCTATTATAAGACGGATTGGTTCTTTGCTCACGTTTTGAGAGGAGATGGACAGATGTTCAATCCAACAGTTTGGAAGATTGTTTTTGAT CTGGGAGAAGTTGGCCCAAGAGAAGGAAATTATACTCTTCAAATAGCATTAGCAGCTGCAGAAATGACGAATATATATATTTATGTAAACGACTTAAACG CTACAATGCCACACTATGCAACTGGGACTGTAGGGACGGATAATGCAATTGCGAGACATGGAAATCATGGACTTTATAGATTTTTTAGTGGAAATCTCCC TTCAAATTTGTTTATAAAAGGGAAAAACACTATTTTTATGAGGCAAGCAAAATCAACCCCGTATGCTTTTGCAGGAGTAATGTATGATTACATACGTTTC GAAGAACCGCAGAATGTCCCTACCAAGAGTACATTAACTTCACCAACACCAAGATAA
AA sequence Show only first row Show all	>Lus10010738 pacid=23148770 polypeptide=Lus10010738 locus=Lus10010738.g ID=Lus10010738.BGIv1.0 annot-version=v1.0 MAVTDEIQLVMPTEDDRRAGTPLAYKEAVKLTNPVSNSTWKDQVDDKYEYTVEKKDLKLKGWISDGSKIGFWILAPSDEYMNGGPKKNDLTCHCGPTCIV VFTSIHTFGLDLVTEYRNGEPWKKVFGPVMIYLNSDGDRATLWQNAKSQLEKEVQMWPYDFVQHEDYLPATKRGTVSGQLFVDDNYVPGVVGSFRYSQLI TVKEGDDIKLGRIIFESPRSGPTLWQIGIPDRSANDFFIPDPNPRYRQYGLWDRYAELYPTNDVVFEVGKSYYKTDWFFAHVLRGDGQMFNPTVWKIVFD LGEVGPREGNYTLQIALAAAEMTNIYIYVNDLNATMPHYATGTVGTDNAIARHGNHGLYRFFSGNLPSNLFIKGKNTIFMRQAKSTPYAFAGVMYDYIRF EEPQNVPTKSTLTSPTPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38030			Rhamnogalacturonate lyase fami...		Lus10010738 [exp]	0	1

Compare expression of checked genes

Lus10010738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.