Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24430 297 / 1e-96 Rhamnogalacturonate lyase family protein (.1) AT2G22620 290 / 3e-94 Rhamnogalacturonate lyase family protein (.1.2) AT1G09910 290 / 3e-93 Rhamnogalacturonate lyase family protein (.1) AT4G38030 287 / 2e-92 Rhamnogalacturonate lyase family protein (.1) AT4G37950 287 / 3e-92 Rhamnogalacturonate lyase family protein (.1) AT1G09890 272 / 6e-87 Rhamnogalacturonate lyase family protein (.1) AT1G09880 261 / 9e-83 Rhamnogalacturonate lyase family protein (.1) AT1G65210 192 / 4e-60 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023106 [exp] 429 / 2e-145 AT2G22620 611 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10012720 [exp] 399 / 1e-135 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10010738 [exp] 367 / 1e-126 AT4G38030 411 / 1e-138 Rhamnogalacturonate lyase family protein (.1) Lus10004281 [exp] 290 / 2e-93 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10039627 [exp] 287 / 1e-92 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10029552 [exp] 284 / 2e-92 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10030233 [exp] 278 / 2e-89 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005978 [exp] 275 / 7e-88 AT4G24430 630 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10019231 [exp] 272 / 7e-86 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G004500 [exp] 308 / 2e-100 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.005G151500 [exp] 294 / 1e-94 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 292 / 2e-94 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 289 / 3e-93 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.006G218500 [exp] 289 / 8e-93 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.002G110100 [exp] 287 / 3e-92 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 281 / 3e-90 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.011G006200 [exp] 249 / 5e-78 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010739 pacid=23148738 polypeptide=Lus10010739 locus=Lus10010739.g ID=Lus10010739.BGIv1.0 annot-version=v1.0 ATGTTGAGAGTTTTTGGCCACTTACCAGCTGGAACTGTTGCTCCACCACCAACTGGGGTTAAACTCACATCGGATAATGTTCATGGTTACAATTTTTGGA CAGAAGCTGATGAAAAAGGAAATTTTGTAATTAAGAATATAAGACCTGGGGAATACAACTTGTATAGTTATGTTCCTGGAATTGTTGGGAGCTTTAGACA TTCTCAGCCTATCACTGTTAAAGAAGGAGATGATATTAAGCTTGGACAACTTACATTTAAGTCTCCAAGAAGTGGTCCTACACTGTGGGAAATCGGCATT CCTGACCGTTCGGCTAACGAATTTTTTGTTCCCGATCCAGATCCGCAGTTCGTGAATAAATTCTTCCTTGATAAACCAAATGACAAGTATAGACAATATG GGTTGTGGGCTCGTTATGCCGAGTTATACCCAAAGGATGATCTTGTTTTTGAAGTTGGCAAGAGCGATTATAAGAAGGATTGGTTCTTTGCTCACGTTTT AAGGGGAGATGGACATACATACAATCCAACAACTTGGAAGATTATTTTCGATCTGCCCGAAGTTAGCCCAACAGGGAACTACACTCTTCAAATAGCATTA GCAGCCGCGGAAACGACGAATACATTTGTTTATGTAAACGATATAAATGCCAAAAGACCACACTACGCAACCGGAACTGTGGGGACGGATAATGCGATTG CAAGACATGGAAATCATGGACTTTATAGATTTTTTAGCGGAGGTCTCCCTTCAAATTTGTTTGTAAAGGGGAAGAACACTATTTTCATGAGGCAGGCAAA ATCGACATCATATATGTTTGCCGGAGTAATGTATGACTACATACGTCTTGAAGGACCTTGTCCCGATCCCCTACCAAAGGCACCTTAA
AA sequence Show only first row Show all	>Lus10010739 pacid=23148738 polypeptide=Lus10010739 locus=Lus10010739.g ID=Lus10010739.BGIv1.0 annot-version=v1.0 MLRVFGHLPAGTVAPPPTGVKLTSDNVHGYNFWTEADEKGNFVIKNIRPGEYNLYSYVPGIVGSFRHSQPITVKEGDDIKLGQLTFKSPRSGPTLWEIGI PDRSANEFFVPDPDPQFVNKFFLDKPNDKYRQYGLWARYAELYPKDDLVFEVGKSDYKKDWFFAHVLRGDGHTYNPTTWKIIFDLPEVSPTGNYTLQIAL AAAETTNTFVYVNDINAKRPHYATGTVGTDNAIARHGNHGLYRFFSGGLPSNLFVKGKNTIFMRQAKSTSYMFAGVMYDYIRLEGPCPDPLPKAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10010739 [exp]	0	1

Compare expression of checked genes

Lus10010739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.