Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59650 590 / 0 CW14 Protein of unknown function (DUF1336) (.1) AT1G10410 555 / 0 Protein of unknown function (DUF1336) (.1) AT3G29180 343 / 9e-113 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT5G39430 320 / 7e-104 Protein of unknown function (DUF1336) (.1) AT1G13970 301 / 1e-96 Protein of unknown function (DUF1336) (.1) AT1G06050 51 / 7e-07 Protein of unknown function (DUF1336) (.1) AT5G35180 49 / 8e-06 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT4G19040 48 / 2e-05 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036683 [exp] 854 / 0 AT1G59650 603 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10039463 [exp] 419 / 5e-142 AT1G59650 478 / 3e-165 Protein of unknown function (DUF1336) (.1) Lus10005831 [exp] 414 / 5e-140 AT1G59650 471 / 1e-162 Protein of unknown function (DUF1336) (.1) Lus10026633 [exp] 315 / 3e-102 AT1G13970 504 / 4e-176 Protein of unknown function (DUF1336) (.1) Lus10030425 [exp] 314 / 5e-102 AT1G13970 499 / 2e-174 Protein of unknown function (DUF1336) (.1) Lus10037132 [exp] 296 / 5e-95 AT3G29180 470 / 9e-163 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Lus10000174 [exp] 155 / 3e-45 AT1G13970 224 / 2e-72 Protein of unknown function (DUF1336) (.1) Lus10036799 [exp] 146 / 9e-40 AT1G13970 181 / 7e-53 Protein of unknown function (DUF1336) (.1) Lus10019068 [exp] 59 / 5e-09 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040100 [exp] 611 / 0 AT1G59650 598 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G190500 [exp] 590 / 0 AT1G59650 579 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G074800 [exp] 464 / 9e-161 AT1G59650 472 / 6e-164 Protein of unknown function (DUF1336) (.1) Potri.017G088000 [exp] 344 / 6e-113 AT3G29180 615 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Potri.010G163100 [exp] 315 / 1e-101 AT1G13970 543 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G213000 [exp] 43 / 0.0006 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G113100 [exp] 43 / 0.0007 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10010740 pacid=23148743 polypeptide=Lus10010740 locus=Lus10010740.g ID=Lus10010740.BGIv1.0 annot-version=v1.0 ATGGGTGGGTGTGTGTCGACGCCGAGAGCATGCGTCGGCGGTGGCGAGAGATTGAGGCCATCGTCGGAGAAGAAGAAAGTTGGTAGAAGAAAGAGGAAGA AGTTATTAACAACCACTCATCACAAGAAGTCTTCCAGATTATCCGACGCATCGTCGCTGGAAAATCAGCAGACGGTTACTGCTGCTTCTGCTGCTGTGTC GTCTGATCATCTTCCTCCTCGAACTTCTTTCAATCATATCAACCCTTCTTTCCAAGCTGCAAGCATTGAGGAGGCATGGTTTGATACAATAGCAGCATTG GACTCTGATGGCGATGAGGATTTCCAAAGTGTCTCAGATGATATCTTGTCTCAAAACGGGTCTGAAGGTGTCCGATTGTCGAATGCTACACTTCATGGTT CTTTATGGCCGAGTCAAGTGAAGCAACAACCGGTGTTCCTCGACGAGATATCGGTGGAGGAAAACGATGATAAGGAGGAAGGGCTGTTGGATAACTGTGG TATCCTTCCTGGTAACTGCTTGCCTTGCCTTGCTTCGACCACCGTTCCACCGGTGGAGAAGAGGCGATCGCTTAGCTCGAGCCCTCCCAGCACTAGGAAG AGAGCTGCTAGCAAAATGTCCTTCAAGTGGAAGGAAGGACATGTCAATAACCCCTTGTTCTCTTCGAAGATGATTCTACATAGGCCAATAGCTGGATCTC AAGTCCCCTTCTGCCCTATTGATAAGAAAATGCTCGATTGTTGGTCTCACATTGATCCAGGCAGTTTCAAAGTTCGTGCTCCGAATTACTTCAGAGACAA GAAGAAGGAGCTTGCCCCCAACTATGCTGCATACTATCCTTTCGGAGTTGATGTGTTCTTATCTCCTCGAAAAGTCGATCACATTGCTCAATTTGTGGAG CTTCCTGTGACTAACACCTCAGGGAAGCTCCCATCTATCCTTGTTGTAAATGTTCAAATTCCATTGTATCCTGCTGCAATTTTTCAAGGGGAAACTGATG GAGAAGGAATGAGCATTGTGCTGTATTTCAAGCTTAATGACAGTTACTTGAAGGAACTCCCAACTAATTTCCAAGACAGTATTAGACGGTTAATCGATGA TGAGGTAGAGAAAGTGAGGGGCTTTGCTGTTGATACAATTGTGCCCTATCGAGAACGGTTGAAGATCTTGGGACGCGTTGTGAATGTAGATGATCTCCAT TTAAATGGTCCTGAGAGGAAACTTATGCAGGCTTACAACGAAAAGCCTGTCCTTTCGCGTCCTCAGCATCAATTCTACTCAGGCGAAAACTACTTCGAGA TCGACATAGACATGCATCGGTTCAGTTACATATCTAGAAAAGGTTTTGAAGCGTTCCTTGACAGACTCAAGATCTGTGGAAACAAGGCTGAAGAGCTGCC AGAGCAGATCTTATGCTGCATAAGGCTAAACGGGATCGACTACATGAACTATCACCAGCTAGGGATGAATCAAGATCCTCTTGATTTCATAAGTGCTTAG
AA sequence Show only first row Show all	>Lus10010740 pacid=23148743 polypeptide=Lus10010740 locus=Lus10010740.g ID=Lus10010740.BGIv1.0 annot-version=v1.0 MGGCVSTPRACVGGGERLRPSSEKKKVGRRKRKKLLTTTHHKKSSRLSDASSLENQQTVTAASAAVSSDHLPPRTSFNHINPSFQAASIEEAWFDTIAAL DSDGDEDFQSVSDDILSQNGSEGVRLSNATLHGSLWPSQVKQQPVFLDEISVEENDDKEEGLLDNCGILPGNCLPCLASTTVPPVEKRRSLSSSPPSTRK RAASKMSFKWKEGHVNNPLFSSKMILHRPIAGSQVPFCPIDKKMLDCWSHIDPGSFKVRAPNYFRDKKKELAPNYAAYYPFGVDVFLSPRKVDHIAQFVE LPVTNTSGKLPSILVVNVQIPLYPAAIFQGETDGEGMSIVLYFKLNDSYLKELPTNFQDSIRRLIDDEVEKVRGFAVDTIVPYRERLKILGRVVNVDDLH LNGPERKLMQAYNEKPVLSRPQHQFYSGENYFEIDIDMHRFSYISRKGFEAFLDRLKICGNKAEELPEQILCCIRLNGIDYMNYHQLGMNQDPLDFISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59650		CW14	Protein of unknown function (D...		Lus10010740 [exp]	0	1
AT3G04780			Protein of unknown function (D...		Lus10020246 [exp]	4.8	0.8279
AT2G38710			AMMECR1 family (.1.2)		Lus10029751 [exp]	7.2	0.7949
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10017654 [exp]	8.0	0.7972
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10001791 [exp]	8.7	0.8160
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10024316 [exp]	11.0	0.8145
AT2G38710			AMMECR1 family (.1.2)		Lus10029750 [exp]	12.4	0.7886
AT2G30990			Protein of unknown function (D...		Lus10033602 [exp]	12.7	0.8031
AT2G38710			AMMECR1 family (.1.2)		Lus10029754 [exp]	15.5	0.7654
AT5G28830			calcium-binding EF hand family...		Lus10015916 [exp]	15.9	0.7790
AT1G11360			Adenine nucleotide alpha hydro...		Lus10033749 [exp]	17.0	0.8172

Compare expression of checked genes

Lus10010740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.