Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38110 533 / 0 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT4G00400 513 / 5e-179 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT1G01610 504 / 1e-175 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT3G11430 475 / 2e-164 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 467 / 4e-161 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT1G06520 413 / 8e-139 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT1G02390 339 / 1e-110 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT4G01950 320 / 1e-103 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT3G11325 294 / 4e-95 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036684 [exp] 946 / 0 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 533 / 0 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004711 [exp] 472 / 4e-163 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10017794 [exp] 434 / 7e-149 AT3G11430 392 / 5e-133 glycerol-3-phosphate acyltransferase 5 (.1) Lus10018832 [exp] 432 / 3e-148 AT3G11430 390 / 3e-132 glycerol-3-phosphate acyltransferase 5 (.1) Lus10010934 [exp] 435 / 1e-147 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10020767 [exp] 431 / 6e-147 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 417 / 2e-140 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10004833 [exp] 405 / 4e-138 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063900 [exp] 775 / 0 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 771 / 0 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 582 / 0 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 570 / 0 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 509 / 9e-178 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.010G201200 [exp] 476 / 9e-165 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.008G058200 [exp] 474 / 5e-164 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.005G202200 [exp] 456 / 4e-156 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.002G192600 [exp] 374 / 3e-124 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10010741 pacid=23148741 polypeptide=Lus10010741 locus=Lus10010741.g ID=Lus10010741.BGIv1.0 annot-version=v1.0 ATGACGGCGACGGCGGCGATATTCTCCACGGTGGAAAAATGCGACTCCACGGGCCGCGAAAGCCACACAGTGGTAGCCGACATGGACGGCACACTCCTCG TCGGCCGGAGCTCATTCCCTTACTTCGCCTTGGTCGCATTCGAGGCCGGCGGCATCCTCCGCCTCCTCCTCCTCCTCTTGCTCTCCCCGATCGCCGGCCT ACTCTACTACTTGGTCTCCGAAAAGGCCGGCATCCAGGTCCTCATCTTCGCCACCTTCGCCGGAATGAAAGTCTCCGAGATCGAGTCCGTCGCACGCGCC GTCCTCCCGAAATTCTACACCTCCGACCTCCATCCGGAGTCCTGGCGGGTGTTCTCCACGGGGGGGCGGCGTGTCGTCCTCACCGCCAACCCTCGGATCA TGGTGGAGCCCACACTCAAGGAATTCCTTGGCGTTGACTTGGTTCTGGGGACGGAGATTTCCACGTATAAGGGACGCGCCACTGGGTTTGTGAAAGGAGC TGAAGGGGTATTGGTTGGGGAGAGTAAGGCTCACGCGCTTGTGGAGGCGTTTGGGGAGTTCCAGCCGGAGGTTGGACTCGGCGACCGGCACACCGACGAG CCGTTTATGGCGCTTTGCAAGGAAGGCTACATGGTCCCACCGAACCCGAAAACCCGACCCGTCACCGCCGACAAGCTCCCGAAACCGATCGTCTTCCACG ACGGCCGCCTCGTCCAGAAACCCACCCCGCTCATCGCCCTCCTCACAATCCTCTGGATCCCCATTGGATTCCTCCTCGCCTGCCTCCGAATCGCCGCCGG CGCCCTCCTCCCGATGCCCTTAGTCTACTACGCCTTCACCGCCCTCGGCGTCCGCGTCACGATCCGCGGCCACCCGCCGCCGCCGCCGACAGACAAAAAC TCCACCGGCGTCCTCTTCGTCTGCTCCCACCGTACCCTCCTCGACCCGATCTTCCTCTCCACCGCCTTGGGCCGCCCCACCACCGCAGTCGTCTACTCCG TCTCCCGCCTCTCCGAAATCATCTCCCCGATCAAGACCGTCCGCCTCAACCGCGACCGCGCCGCCGACGCCGCCATGATCAAATCGCTCCTCCGCGAAGG AGATTTGGTGATCTGCCCCGAAGGGACCACTTGCCGTGAACCGTTTCTGCTCCGATTCTCAGCTCTCTTCGCCGAATTGACCGACGAGATCGTCCCCGTG GCGATGGGGAATCGGCTGGGGATGTTCCACGGCACGACGGCGAGGGGGTGGAAAGGGATGGATCCGTTCTATTTTTTTATGAATCCTAGTCCGGCATATG AGGTGACGTTTTTGAGTAAGTTGCCAGAGGAGCTGACGTGTTCGCGAGGAGGGAAGTCGAGTGTTGAAGTGGCGAACTATATACAGAGAGTGATTGCCGC TACGCTGTCGTATGAGTGCACTGGTTTTACTAGGAAGGATAAGTACAGAGCGTTGGCCGGAAACGATGGGATCGTCGCGGCGGAGAAGAAGAAGTCGTCG TCGCCGTCGAAGGTTGATGAGATTAAAGAGAAAGTGATGGGATGCTAA
AA sequence Show only first row Show all	>Lus10010741 pacid=23148741 polypeptide=Lus10010741 locus=Lus10010741.g ID=Lus10010741.BGIv1.0 annot-version=v1.0 MTATAAIFSTVEKCDSTGRESHTVVADMDGTLLVGRSSFPYFALVAFEAGGILRLLLLLLLSPIAGLLYYLVSEKAGIQVLIFATFAGMKVSEIESVARA VLPKFYTSDLHPESWRVFSTGGRRVVLTANPRIMVEPTLKEFLGVDLVLGTEISTYKGRATGFVKGAEGVLVGESKAHALVEAFGEFQPEVGLGDRHTDE PFMALCKEGYMVPPNPKTRPVTADKLPKPIVFHDGRLVQKPTPLIALLTILWIPIGFLLACLRIAAGALLPMPLVYYAFTALGVRVTIRGHPPPPPTDKN STGVLFVCSHRTLLDPIFLSTALGRPTTAVVYSVSRLSEIISPIKTVRLNRDRAADAAMIKSLLREGDLVICPEGTTCREPFLLRFSALFAELTDEIVPV AMGNRLGMFHGTTARGWKGMDPFYFFMNPSPAYEVTFLSKLPEELTCSRGGKSSVEVANYIQRVIAATLSYECTGFTRKDKYRALAGNDGIVAAEKKKSS SPSKVDEIKEKVMGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10010741 [exp]	0	1
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Lus10036684 [exp]	1.0	0.9278
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10010587 [exp]	8.2	0.8038
AT1G31740		BGAL15	beta-galactosidase 15 (.1)		Lus10043422 [exp]	10.9	0.8120
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	15.0	0.7886
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10018832 [exp]	15.0	0.7794
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10017751 [exp]	17.3	0.7301
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	19.3	0.8044
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10040474 [exp]	20.1	0.7835
AT3G07870			F-box and associated interacti...		Lus10036105 [exp]	20.2	0.7552
AT2G20870			cell wall protein precursor, p...		Lus10018569 [exp]	21.4	0.7859

Compare expression of checked genes

Lus10010741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.