Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037239 [exp] 59 / 8e-11 AT5G09650 446 / 1e-159 pyrophosphorylase 6 (.1) Lus10035653 [exp] 58 / 4e-10 AT5G09650 446 / 2e-159 pyrophosphorylase 6 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04554 [flax] [poplar] Extensin_2 Extensin-like region
Representative CDS sequence Show only first row Show all	>Lus10010742 pacid=23148754 polypeptide=Lus10010742 locus=Lus10010742.g ID=Lus10010742.BGIv1.0 annot-version=v1.0 ATGGCGACGGCGGTAAGAGCACTGGCGGCTGCGGCCAACACGGCCACCCCAGCTTCTTGCTTACGGCCATTCGCTTACAAATCAAGGCAGAGCCTTCGTT TCAGCAAGAAACACTTGTCTTTTTCGCTGGCGAAGAGGTTTCTCCTTACGCCAATAAAACCATACAATTATAAATCTCCACCCCCACCTCCGACTCCGGT GTACAAGTACAAGTCGCCACCGCCACCGGTGTACAAGTCACCACCACCACCCACGCCGATGTACAAATACAAATCACCGCCTCCACCAGTGTACAAGTCA CCACCACCACCAACTCCGGTTTACAAGTACAAGTCACCACCGCCACCGGTGTACAAGTCGCCTCCTCCACCAACAAAGCCATACAAGTACAAGTCTCCAC CACCACCACCGGTCTATAAGTCACCACCGCCACCGGTTTACAAGTACAAGTCACCGCCGCCGCCGGTGCACAAGCCACCTCCGCATTACATCTATGCTTC ACCTCCTCCACCACACCACGTCTAG
AA sequence Show only first row Show all	>Lus10010742 pacid=23148754 polypeptide=Lus10010742 locus=Lus10010742.g ID=Lus10010742.BGIv1.0 annot-version=v1.0 MATAVRALAAAANTATPASCLRPFAYKSRQSLRFSKKHLSFSLAKRFLLTPIKPYNYKSPPPPPTPVYKYKSPPPPVYKSPPPPTPMYKYKSPPPPVYKS PPPPTPVYKYKSPPPPVYKSPPPPTKPYKYKSPPPPPVYKSPPPPVYKYKSPPPPVHKPPPHYIYASPPPPHHV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010742 [exp]	0	1
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	2.8	0.8751
					Lus10028589 [exp]	5.1	0.9172
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	7.1	0.8613
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10013653 [exp]	8.7	0.7841
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Lus10030629 [exp]	13.2	0.8517
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019835 [exp]	13.3	0.7792
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10023077 [exp]	14.5	0.8192
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10038977 [exp]	19.7	0.8556
AT5G08380		ATAGAL1	alpha-galactosidase 1 (.1)		Lus10017365 [exp]	22.6	0.8428
AT2G31800			Integrin-linked protein kinase...		Lus10007432 [exp]	22.9	0.8037

Compare expression of checked genes

Lus10010742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.