Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14260 559 / 0 PIP proline iminopeptidase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035652 [exp] 719 / 0 AT2G14260 560 / 0.0 proline iminopeptidase (.1.2) Lus10011204 [exp] 48 / 9e-06 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10011202 [exp] 45 / 5e-05 AT4G02340 206 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) Lus10039814 [exp] 45 / 6e-05 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10036177 [exp] 42 / 0.0006 AT4G02340 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10038312 [exp] 41 / 0.001 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G287700 [exp] 613 / 0 AT2G14260 575 / 0.0 proline iminopeptidase (.1.2) Potri.013G134800 [exp] 45 / 4e-05 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G090601 [exp] 43 / 0.0003 AT3G61540 353 / 2e-119 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10010743 pacid=23148752 polypeptide=Lus10010743 locus=Lus10010743.g ID=Lus10010743.BGIv1.0 annot-version=v1.0 ATGGGTTTATTTGGTTTAGCCAACTCGTCGGCTTTTCTTCTTACCGCTTCCTTTCCATCTTTGCCTTCTTTCTCGACTTCGCACCTTTCCTCTTCCTCCC TCAGTCCTCGTCTCTGCATCGGGAGCAAGAAGATTGTGGCTCGCGCGCGAAATCTCGATCATAATTTGGAACAGGAGCTACTGGGTGAACTGATGGAATC CGACAAGGTTGTTAACTCTCAGGGTTTGAATCGGAGCCTCTACCCTCCTATTGAGCCTTATGATACTGGGTTTCTGAAAGTGTCGGATCTTCACTCCATC TACTACGAGCAGTCTGGAAATCCGAGTGGTCATCCAGTTGTTTTCCTTCACGGTGGTCCTGGTGGAGGAACTGCGCCCAGCAATAGAAGGTTCTTTGATC CAGAATTTTACAGAATCGTTCTCTTTGATCAGAGAGGTGCTGGGAAAAGTGTACCCCATGCTTGCTTGGAGCACAACACCACTTGGGATCTTATTGACGA TATTGAAAAACTTAGAGAATACTTAAAAATCCCAGAATGGCAGGTCTTTGGTGGTTCATGGGGAAGCACGCTTTCCCTTGCTTACAGCCAATCTCATCCT GACAAGGTGACTGGCTTGGCCCTCAGAGGAATTTTTCTTTTGCGAAAGAAGGAAATTGATTGGTTCTATGAGGGTGGGGCTGCAGCAATATTCCCTGATG CTTGGGAGCCATTTAGGGACCTGATTCCAGAAGATGAAAGAGGGTCTTTTGTTAATGCTTACAGCAAGAGACTGAACTCCGATGACATGGAAACTCAACA TGCAGCTGCAAAAGCTTGGACCAAATGGGAAATGATGACCGCCCATCTTGTTCCACTTGAGGACACCATCAAGAAAGGGGACGATGATATGTTTTCTCTG GCATTTGCGAGGATAGAAAACCATTACTTCATTAACAAGGGGTTCTTCCTGTCAGATTCATATCTCTTAGACAATGTGGATAAGATCCGGCATATCAACA CCACAATTGTACAGGGGAGGTACGATGTATGTTGTCCTATGATGTCTGCTTGGGATCTGCACAAGGCATGGCCGGAAGCAGAATTCAAGATTGTAAAGGA TGCAGGGCACTCTGCGAATGAAGCGGGGACAACTGCGGAGCTTGTTGCTGCAAATGAAAGGCTGAAAAATATACTTAGAAACAAGTAG
AA sequence Show only first row Show all	>Lus10010743 pacid=23148752 polypeptide=Lus10010743 locus=Lus10010743.g ID=Lus10010743.BGIv1.0 annot-version=v1.0 MGLFGLANSSAFLLTASFPSLPSFSTSHLSSSSLSPRLCIGSKKIVARARNLDHNLEQELLGELMESDKVVNSQGLNRSLYPPIEPYDTGFLKVSDLHSI YYEQSGNPSGHPVVFLHGGPGGGTAPSNRRFFDPEFYRIVLFDQRGAGKSVPHACLEHNTTWDLIDDIEKLREYLKIPEWQVFGGSWGSTLSLAYSQSHP DKVTGLALRGIFLLRKKEIDWFYEGGAAAIFPDAWEPFRDLIPEDERGSFVNAYSKRLNSDDMETQHAAAKAWTKWEMMTAHLVPLEDTIKKGDDDMFSL AFARIENHYFINKGFFLSDSYLLDNVDKIRHINTTIVQGRYDVCCPMMSAWDLHKAWPEAEFKIVKDAGHSANEAGTTAELVAANERLKNILRNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14260		PIP	proline iminopeptidase (.1.2)		Lus10010743 [exp]	0	1
AT1G63420			Arabidopsis thaliana protein o...		Lus10027473 [exp]	10.1	0.6961
AT2G19270			unknown protein		Lus10020014 [exp]	64.5	0.6294
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10030947 [exp]	117.5	0.6119
AT3G54680			proteophosphoglycan-related (....		Lus10033654 [exp]	248.0	0.5888

Compare expression of checked genes

Lus10010743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.