Plant FIBer expression Database

Lus10010744 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17000 231 / 1e-67 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035651
[exp]
880 / 0 AT4G17000 250 / 9e-75 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G081900
[exp]
329 / 2e-104 AT4G17000 314 / 3e-97 unknown protein
Potri.001G287800
[exp]
300 / 8e-93 AT4G17000 333 / 8e-104 unknown protein
PFAM info
Representative CDS sequence
>Lus10010744 pacid=23148704 polypeptide=Lus10010744 locus=Lus10010744.g ID=Lus10010744.BGIv1.0 annot-version=v1.0
ATGGCGGACGAATCACTGTCACTTTCGTTTCTCTCTTCGCGGTCAGGTGAGTACCCGGAAGTAGAAGAGGAAGACTTCTACGAAAAAATCGAAGCGCCCA
AGTACAGCGACCTCACTAAGCCTGATCCCCGCCGCTCCGGCGACGATCGCCACTGGTTCTGCCTCCGTGTCGGATGTGATCAAAAGCACGAAGAAGAAAT
GGACTCTGAAGCTATATACAAGAATTTCGTTCTTAGAGTCATGGCTGCTAGGAGTCCTAATGTCAGGCTTCGGAAAGCATTAAGTAACAGAGACAAAAGC
TCCAATCTGAGATGTCCACAGACAGTACCGGCAAAGCCTTCCAGACCGAGAATGGAAAGACTGGCATTGATCTCATCGATATCTAAGAAACTAGTCGACA
ATACGACAGTGAAAGTGAAGAAGCCACTCGCTACTACTAAACAGAATTCGACTCCAAACGTAAAGGCAAAGCAACCTTCCACTCTAGGCAAAGCTCTTAC
GACTCCTAGGAACAGGAGACCTGCGTTCCAAGATCCAGCTGCATTCAGAAGTGTTCGGAACCCAAAGGCAACAACCGCTCCTGGATTGCCAAAGAAGAGG
GAAGTGGCAAAGACTCTGGTGTTTGATTCCCCTAAGAAGCAAGCTAGGACGAAGACTCCACCGATTGAAATGGACAGTGTGAAGACTTTGTGTGGAGGGA
TGAAGAAGATTAAGATCACAGATCAAAAGAAGCAAGTGACTAGGAGTAAAATGGTGCCGTTGGATTGTCCGCAGAAACAATTTAGGGGACGGGAGGTGAA
AAGCCGAGTTTACGATGGACTGCATACTCCAATCAAAGTATGTAAGCAAGCCGGAGGATCTTCCAAGTGTTCAGAGGAGAAGAACAAGGTAAGAAGCACC
ACACAGCAGAACTCTGGTCCTGCACCGTCCCACATGGAGATTGAAGAGAAATGCAACAACGGCCCTCAAGTTGAAGTCACAATGAGGGAGGAAGAGAAAG
AAACTAAATTGGCTTCTAATAGTAGCGAAAACCAATGTGAAGCAGTAGAGGGTGACGATAAAGAAAACGATTCAGTCTCTGATGAGAATAGACCTGCACA
ACATGATGATGGCCACCTGAAGAAGAATATTCAGGGCTATCAGGACATTTTGAAAGGCACAAAGATATCAAGAACAACGCGCAAGCCATTCAAGGAGAGT
TCTGTAGCTCCTCCTGGAACTGTACCAGCTCAAAGTTTGAAGCATCTAAAACCGAAACCTACGCATCCCAAGCCATTTCGGTTGAGAACTGATGAAAGGG
GAATTCTAAAAGAAGCAAATATTGAGAAGAAGCTCCTCCATCTTACACCAGTTAAAGATAATGCAACAAGGCTCCTGAAACCAAATCCTCAGAAGAGACA
TCAACCGAAAAATGAAATTGATGAAACAAACGGGCCACAGGGAGAGCAACAGCAGGAAGCTTCTAGCTTGAGGACTCCAAAGAGGAGAGGGATTCCAACT
CCAAATAAACACACAGTATCTTCGCAGAAGAAAGCTGTTTTACGGCGAATGAACTCTCCAAGCAGCGAAGCGGCAGCCCAGAAGACCAAGACAGTTCTGA
AGAAAGCTAAACCATCAGTGGCTACAACATGTACAAAAAGAATGGAGGTGATGGGTCAGCACTCGGTAGAATGA
AA sequence
>Lus10010744 pacid=23148704 polypeptide=Lus10010744 locus=Lus10010744.g ID=Lus10010744.BGIv1.0 annot-version=v1.0
MADESLSLSFLSSRSGEYPEVEEEDFYEKIEAPKYSDLTKPDPRRSGDDRHWFCLRVGCDQKHEEEMDSEAIYKNFVLRVMAARSPNVRLRKALSNRDKS
SNLRCPQTVPAKPSRPRMERLALISSISKKLVDNTTVKVKKPLATTKQNSTPNVKAKQPSTLGKALTTPRNRRPAFQDPAAFRSVRNPKATTAPGLPKKR
EVAKTLVFDSPKKQARTKTPPIEMDSVKTLCGGMKKIKITDQKKQVTRSKMVPLDCPQKQFRGREVKSRVYDGLHTPIKVCKQAGGSSKCSEEKNKVRST
TQQNSGPAPSHMEIEEKCNNGPQVEVTMREEEKETKLASNSSENQCEAVEGDDKENDSVSDENRPAQHDDGHLKKNIQGYQDILKGTKISRTTRKPFKES
SVAPPGTVPAQSLKHLKPKPTHPKPFRLRTDERGILKEANIEKKLLHLTPVKDNATRLLKPNPQKRHQPKNEIDETNGPQGEQQQEASSLRTPKRRGIPT
PNKHTVSSQKKAVLRRMNSPSSEAAAQKTKTVLKKAKPSVATTCTKRMEVMGQHSVE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G17000 unknown protein Lus10010744
[exp]
0 1
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Lus10027331
[exp]
2.0 0.9706
AT3G51280 Tetratricopeptide repeat (TPR)... Lus10041886
[exp]
3.0 0.9777
AT5G03870 Glutaredoxin family protein (.... Lus10017029
[exp]
3.0 0.9664
AT5G15510 TPX2 (targeting protein for Xk... Lus10010706
[exp]
3.5 0.9713
AT1G70340 Plant protein of unknown funct... Lus10029158
[exp]
3.5 0.9651
AT1G06660 JASON JASON, unknown protein Lus10020732
[exp]
4.0 0.9619
AT4G02800 unknown protein Lus10014668
[exp]
4.5 0.9720
AT3G15550 unknown protein Lus10025757
[exp]
6.5 0.9694
AT3G15550 unknown protein Lus10035906
[exp]
7.0 0.9677
AT5G51600 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA ... Lus10015684
[exp]
7.4 0.9705

Lus10010744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.