Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62870 397 / 1e-140 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT2G47610 374 / 8e-132 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) AT5G08180 42 / 0.0002 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035650 [exp] 451 / 5e-162 AT3G62870 461 / 1e-166 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10009322 [exp] 442 / 2e-158 AT3G62870 458 / 2e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10012463 [exp] 442 / 2e-158 AT3G62870 457 / 2e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10015841 [exp] 443 / 1e-157 AT3G62870 460 / 4e-165 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10035632 [exp] 440 / 3e-157 AT3G62870 453 / 2e-163 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10010763 [exp] 417 / 9e-149 AT3G62870 441 / 3e-159 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Lus10020500 [exp] 436 / 8e-145 AT1G09970 755 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000421 [exp] 42 / 0.0001 AT5G08180 240 / 9e-83 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2) Lus10004366 [exp] 42 / 0.0001 AT5G08180 227 / 1e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101000 [exp] 425 / 8e-152 AT3G62870 376 / 3e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.017G100800 [exp] 425 / 9e-152 AT3G62870 377 / 1e-133 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.004G113800 [exp] 424 / 1e-151 AT3G62870 399 / 5e-142 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.004G113900 [exp] 407 / 4e-144 AT3G62870 362 / 7e-127 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.001G326400 [exp] 394 / 2e-139 AT2G47610 385 / 1e-136 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1) Potri.008G110100 [exp] 42 / 0.0001 AT5G08180 225 / 8e-77 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF01248 [flax] [poplar] Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Representative CDS sequence Show only first row Show all	>Lus10010745 pacid=23148729 polypeptide=Lus10010745 locus=Lus10010745.g ID=Lus10010745.BGIv1.0 annot-version=v1.0 ATGCCGGGAAAACCAACACCTAAAATTTGGCTTGTGAAGGCGAAGCAAGGCCCAACTGCGGCCCGAAAAGACCCAAATCGTTTGCGAAGGTCGAAATGGG TCCGGCTCCAGCCCAAAGCCCCAAAAAGAGGAATTAAAGCCCCTGTAGCTACAAAGAAGAAACCTGAAAAGACTGTGAATCCTTTGTTTGAGAAGCGACC AAAGCAATTTGGAATTGGTGGTGCACTGCCGCCAAAGAGGGATTTGACTAGATTTGTTAAGTGGCCTCATGTCGTTCGTATTCAGAGGCAAAGAAGGATA CTGAAGCAGCGTTTGCAGGGTCCTCCTGCAGTGAATCAGTTTACAAAAGCACTGGACAAGAACCTTGCTACTCAGATGTTTAAGCTTCTGCTGAAATATC GCCCTGAAGACAAAGCTGCTAAAAAGGAAAGGCTTCTTAGTAAAGCAAAAGCTGAAGCCGAAGGGAAGACTGTGGAGTCGAAGAAGCCCATTGTTGTTAA GTACGGGCTTAATCATGTGACTTACCTTATTGAGCAGAACAAGGCACAGCTGGTGGTTATTGCTCATGATGTTGATCCAATTGAACTAGTTGTTTGGTTG CCTGCACTCTGTCGTAAGATGGAGGTTCCCTATGCTATTGTGAAGGGCAAGTCAAGGCTTGGAGCGATCGTCCACAAGAAAACAGCCGCTGCACTATGCT TAACGTCTGTGAAGAACGAGGACAAAATGGAATTCAGCAAGATTTTGGAGGCAGTGAAGGCGAACTTCAACGACAAGTTTGATGAGCACAGGAAGAGATG GGGTGGTGGGATAATGGGATCGAAATCTCAGGCCAAGACGAAAGCCAAGGAAAGACTCTTGGCAAAGGAGGCTGCCCAAAGAATGTCTTGA
AA sequence Show only first row Show all	>Lus10010745 pacid=23148729 polypeptide=Lus10010745 locus=Lus10010745.g ID=Lus10010745.BGIv1.0 annot-version=v1.0 MPGKPTPKIWLVKAKQGPTAARKDPNRLRRSKWVRLQPKAPKRGIKAPVATKKKPEKTVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPHVVRIQRQRRI LKQRLQGPPAVNQFTKALDKNLATQMFKLLLKYRPEDKAAKKERLLSKAKAEAEGKTVESKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWL PALCRKMEVPYAIVKGKSRLGAIVHKKTAAALCLTSVKNEDKMEFSKILEAVKANFNDKFDEHRKRWGGGIMGSKSQAKTKAKERLLAKEAAQRMS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	0	1
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	1.0	0.9159
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	2.4	0.8957
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10006266 [exp]	3.2	0.9033
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	3.5	0.8749
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10040931 [exp]	4.9	0.8613
AT4G23860			PHD finger protein-related (.1...		Lus10023084 [exp]	5.0	0.8744
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10042100 [exp]	6.7	0.8685
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10000255 [exp]	6.9	0.8498
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016432 [exp]	7.7	0.8681
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10003358 [exp]	8.0	0.8688

Compare expression of checked genes

Lus10010745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.