Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14095 76 / 2e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035649 [exp] 275 / 2e-93 AT2G14095 114 / 1e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G310100 [exp] 93 / 7e-23 AT2G14095 109 / 1e-29 unknown protein Potri.017G050000 [exp] 74 / 8e-16 AT2G14095 105 / 6e-28 unknown protein Potri.002G101600 [exp] 42 / 0.0002 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010746 pacid=23148753 polypeptide=Lus10010746 locus=Lus10010746.g ID=Lus10010746.BGIv1.0 annot-version=v1.0 ATGTCTTGGGCAGCTGCCCGCGGCGGAGGAAGCTGCTCTGCCTCTTCAAACTACAACTTGAGAAACTTGGTGGACTTACTACGACGCTTTTACAACAACG GATCATCTTCAGCTCTCACCTGTTCCTGGAAGAGAAGCAACGTTAATATTGCTGCTAATGTTGCATCATCATCAGCAGCTGGTATTAACTCATCAACATT AATGGTGGCTCATTACAATTACAAGCAGGCGCCTACGGGGACGACAAAGCAGATCAGAGGATTGCAGTTGATCAGCTGCAACAACTTGCTGATCAAGGGC CGCTTATTTTTGCATAATTCGGCTGTTGACAACAACAAGTTTGCGGCTGCCAGCACTCCACCATCGTCGTTAGTGCCTGCATCACTTCCACGGCCCAAAT GGAATTTCACGGGTTGGGTAAAGTGGGCGCTGGGAGCAATCTTTACGATACTCTTCCCTTTCTGGAAGCAAAAATGGGAAAGGATGAAAGCAATTGGAAG GGAGGCAGAGATAGTGGCAGAGGAGATGGAAAGAGCGGCGGAGGTTGTGGAGAAAGTGGCGACGGTGGCGGAAAATATGTCTGCCCAACTGGCTGAAAGT CTTTCGTCTACTAATGAAGAACTAAAGGAAGCAGCTTTATTTGCAGAGAGGATATCCAAAACAACTGCTCACGACGCTCATGTAGCCAGAGACTTGTTAC ACCAGGTTGATAAGTTGGCGCATGATTTTGATGACTTGGAGAAGATGGTGCATGCAACCCAACCAAAACCTTGCTCACCGTAA
AA sequence Show only first row Show all	>Lus10010746 pacid=23148753 polypeptide=Lus10010746 locus=Lus10010746.g ID=Lus10010746.BGIv1.0 annot-version=v1.0 MSWAAARGGGSCSASSNYNLRNLVDLLRRFYNNGSSSALTCSWKRSNVNIAANVASSSAAGINSSTLMVAHYNYKQAPTGTTKQIRGLQLISCNNLLIKG RLFLHNSAVDNNKFAAASTPPSSLVPASLPRPKWNFTGWVKWALGAIFTILFPFWKQKWERMKAIGREAEIVAEEMERAAEVVEKVATVAENMSAQLAES LSSTNEELKEAALFAERISKTTAHDAHVARDLLHQVDKLAHDFDDLEKMVHATQPKPCSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14095			unknown protein		Lus10010746 [exp]	0	1
AT5G57510			unknown protein		Lus10026228 [exp]	3.0	0.9436
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10030957 [exp]	3.0	0.9225
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10033905 [exp]	4.0	0.9101
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10012106 [exp]	4.2	0.9527
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10023048 [exp]	7.5	0.9326
					Lus10007415 [exp]	8.2	0.9485
AT1G14220			Ribonuclease T2 family protein...		Lus10027978 [exp]	9.3	0.9012
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010436 [exp]	11.1	0.8819
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10024085 [exp]	11.7	0.8963
AT4G14940		ATAO1	amine oxidase 1 (.1)		Lus10021922 [exp]	15.3	0.9240

Compare expression of checked genes

Lus10010746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.