Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33680 721 / 0 AGD2 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G13810 518 / 0 EDTS5, ALD1 eds two suppressor 5, AGD2-like defense response protein 1 (.1) AT1G80360 69 / 2e-12 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 68 / 5e-12 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT1G77670 62 / 4e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G53970 62 / 4e-10 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT4G23590 49 / 4e-06 Tyrosine transaminase family protein (.1) AT4G23600 47 / 2e-05 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035646 [exp] 878 / 0 AT4G33680 723 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10020959 [exp] 536 / 0 AT2G13810 587 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Lus10000205 [exp] 201 / 2e-63 AT4G33680 120 / 5e-33 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10032388 [exp] 77 / 7e-15 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10023080 [exp] 76 / 3e-14 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10014710 [exp] 69 / 2e-12 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10004089 [exp] 68 / 6e-12 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023117 [exp] 66 / 2e-11 AT1G80360 593 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10013676 [exp] 58 / 1e-08 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G082100 [exp] 726 / 0 AT4G33680 736 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G115800 [exp] 578 / 0 AT2G13810 601 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.007G013200 [exp] 576 / 0 AT2G13810 644 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.002G091500 [exp] 551 / 0 AT2G13810 581 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.005G079200 [exp] 67 / 7e-12 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G175400 [exp] 66 / 2e-11 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G088426 [exp] 64 / 1e-10 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.002G086000 [exp] 63 / 2e-10 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G177000 [exp] 57 / 1e-08 AT1G80360 573 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 57 / 2e-08 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10010748 pacid=23148761 polypeptide=Lus10010748 locus=Lus10010748.g ID=Lus10010748.BGIv1.0 annot-version=v1.0 ATGGCTCTTCATCACCATCTCAACGCCTCCATCTCTTCCTCTTCCTCGCCTCTCCTTTCTCCAACTGCATTCAATTCCTCTTCCAGGAGTCAGACTGTTT CTCTTCGGCCTCGAAACTTTGGGATTTGCAGAAGCGTCGCCACTTCTCAAACAGATAAGACTGAGACCGCTTATAAAACGAATGTCTCTCGCAATGCCAA CATGGGGAAGCTTCAAGCTGGTTACTTGTTCCCAGAGGTTGCCAGAAGAAGGAATGCCCACAAAGAGAAATACCCTGATGCTGAAGTGATAAGCCTTGGG ATCGGAGACACTACCGAGCCCATTCCGGATGTGATTACTTCTGCGATGTCGAAGAAATCTCAAGCATTGTCTACTCGGGAAGGTTACAGTGGCTATGGGG CAGAACAAGAGCTGCCTCCTCTTAGAGCTGCAATCCGTTCAACTTTCTATGCTGATCTTGGTATTGATGATGATGACATTTTCGTCTCTGATGGTGCCAA ATGTGACATATCACGTCTTCAGGTTGTTTTTGGCTCCAAAGTCACCATGGCTGTGCAAGATCCATCATATCCAGCTTATGTGGACTCAAGTGTCATTATG GGTCAGACTGGGCAATTCCAAACTGATGTGGAGAAGTATGCCAACATTGAATACATGAGATGCACTCCCGAGAATGGTTTCTTTCCTGATTTATCTACGG TCACCCAAACAGACATCATATTTTTCTGTTCCCCAAACAACCCTACTGGTGCTGCTGCAACAAGGGAGCAACTGACTCAATTAGTACAGTTTGCAAAGAA TAACGGGTCGATTATCGTCTACGACTCAGCATATGCAATGTATATGTCCGATGACAACCCTCGATCCATATTTGAAATTCCCGGAGGGAAAGAGGTAGCG ATTGAGACTTCCTCGTTCAGCAAGTATGCAGGATTTACCGGAGTTCGGCTAGGCTGGACTGTAGTCCCCAAGCAGCTCCTTTTCTCGGATGGGTTTCCTG TTGCCCGGGATTTTAACCGAGTTGTCTGTACCTGCTTCAACGGTGCATCCACTGTCGCTCAAGCTGGTGGCTTGGCATGCCTATCACCAGAAGGCCTCAA GGCAATGCGCGAGGTGATTGGATTCTACAAAGAGAACACAGAGATCATAGTAGACACGTTTAACTCACTTGGCTTTGAAGTCTATGGAGGAAGGAATGCT CCATATGTATGGGTGAACTTCCCGGGGCGTAGCTCGTGGGAAGTGTTTGGGGAGATATTGGAGAAGACCCATGTGGTAACTACACCCGGGAGTGGGTTTG GTCCTGGCGGTGAAGGGTTCGTTAGGGTCAGCGCCTTCGGTCACAGAGAAAATGTCTTGGAAGCCTGCAAGAGGTTCAAGCAGCTTTACAAGTGA
AA sequence Show only first row Show all	>Lus10010748 pacid=23148761 polypeptide=Lus10010748 locus=Lus10010748.g ID=Lus10010748.BGIv1.0 annot-version=v1.0 MALHHHLNASISSSSSPLLSPTAFNSSSRSQTVSLRPRNFGICRSVATSQTDKTETAYKTNVSRNANMGKLQAGYLFPEVARRRNAHKEKYPDAEVISLG IGDTTEPIPDVITSAMSKKSQALSTREGYSGYGAEQELPPLRAAIRSTFYADLGIDDDDIFVSDGAKCDISRLQVVFGSKVTMAVQDPSYPAYVDSSVIM GQTGQFQTDVEKYANIEYMRCTPENGFFPDLSTVTQTDIIFFCSPNNPTGAAATREQLTQLVQFAKNNGSIIVYDSAYAMYMSDDNPRSIFEIPGGKEVA IETSSFSKYAGFTGVRLGWTVVPKQLLFSDGFPVARDFNRVVCTCFNGASTVAQAGGLACLSPEGLKAMREVIGFYKENTEIIVDTFNSLGFEVYGGRNA PYVWVNFPGRSSWEVFGEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENVLEACKRFKQLYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10010748 [exp]	0	1
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	2.0	0.9070
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Lus10032381 [exp]	3.5	0.8658
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10035953 [exp]	3.5	0.9092
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10040477 [exp]	8.9	0.8653
AT3G44160			Outer membrane OMP85 family pr...		Lus10013360 [exp]	9.5	0.8589
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10039049 [exp]	11.1	0.8808
AT5G52920		PKP-BETA1, PKP2...	PLASTIDIAL PYRUVATE KINASE 2, ...		Lus10039316 [exp]	12.2	0.8642
AT5G43960			Nuclear transport factor 2 (NT...		Lus10014469 [exp]	12.4	0.8621
AT5G48470			unknown protein		Lus10038234 [exp]	15.4	0.7703
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	16.5	0.8345

Compare expression of checked genes

Lus10010748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.