Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78590 211 / 6e-68 NADK3, ATNADK-3 ARABIDOPSIS THALIANA NADH KINASE 3, NAD(H) kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035645 [exp] 327 / 2e-113 AT1G78590 384 / 1e-134 ARABIDOPSIS THALIANA NADH KINASE 3, NAD(H) kinase 3 (.1) Lus10000204 [exp] 232 / 1e-78 AT1G78590 154 / 4e-47 ARABIDOPSIS THALIANA NADH KINASE 3, NAD(H) kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104400 [exp] 238 / 1e-78 AT1G78590 416 / 4e-147 ARABIDOPSIS THALIANA NADH KINASE 3, NAD(H) kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF01513 [flax] [poplar] NAD_kinase ATP-NAD kinase
Representative CDS sequence Show only first row Show all	>Lus10010749 pacid=23148759 polypeptide=Lus10010749 locus=Lus10010749.g ID=Lus10010749.BGIv1.0 annot-version=v1.0 ATGGCGCGGAGGAGAGGGCTACTCTTGTTGAAGCCCTTTGATATGTACCCAATTGGCCAACTCTACACCCAGTCTCGCGCTACCAATCCCAAGATTTTGC AATTCCTGGATAATAGGCGGAAGGTTCATAGAGAAGCCGTTCACTTCTGTCAGAGTATTTTGCAGAAGAAGGCAGTTGATTGGGAACCGGTTGTACGAGC TAATTTGTGTCGGCCGATTCAAAATGTTGATTTTGTCATCACTGTTGGTGGTGATGGAACACTTTTACAAGCAAGTCATTTCATGGATGACTCGATTCCA GTTTTTGGAGTGAATTCAGACCCCACTCAAGTTGAAGAGGTTGAGGAATTCATTAATGATTTTGATGCTAACAGGAGCACTGGCTATCTGTGTGCAGCAA CTATGAAAAGCTTTGAGCAGGTTCTAGATGATATCCTAGAGAGTCGAAAACTACCTTCGGAGTTGCGCAGAATATCGTTAAGGGGTATAGTCAACCCAGA TGAAGTGATGGAGATCACTTGGTTTTCAGAGGAGGGGTTTTTATACGTTGACGGGTCGAATGTTGTGCGTAGTATTCAGTATGGTGACAGGATTGACATG TCTTCTAGAGCCCCTAATTTGAAAGTCTTCTTGCCTGAGACGTTGCAGTCATGA
AA sequence Show only first row Show all	>Lus10010749 pacid=23148759 polypeptide=Lus10010749 locus=Lus10010749.g ID=Lus10010749.BGIv1.0 annot-version=v1.0 MARRRGLLLLKPFDMYPIGQLYTQSRATNPKILQFLDNRRKVHREAVHFCQSILQKKAVDWEPVVRANLCRPIQNVDFVITVGGDGTLLQASHFMDDSIP VFGVNSDPTQVEEVEEFINDFDANRSTGYLCAATMKSFEQVLDDILESRKLPSELRRISLRGIVNPDEVMEITWFSEEGFLYVDGSNVVRSIQYGDRIDM SSRAPNLKVFLPETLQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Lus10010749 [exp]	0	1
AT2G25560			DNAJ heat shock N-terminal dom...		Lus10032540 [exp]	7.0	0.8028
					Lus10029487 [exp]	21.6	0.6957
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10004847 [exp]	22.4	0.7886
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10035176 [exp]	23.7	0.7838
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10020642 [exp]	26.1	0.7883
AT5G35400			Pseudouridine synthase family ...		Lus10022949 [exp]	26.2	0.7437
AT3G47570			Leucine-rich repeat protein ki...		Lus10037311 [exp]	31.1	0.7676
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10021081 [exp]	32.7	0.7648
AT3G59310			Eukaryotic protein of unknown ...		Lus10004060 [exp]	33.3	0.7304
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	34.3	0.7575

Compare expression of checked genes

Lus10010749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.