Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09930 145 / 5e-41 ATOPT2 oligopeptide transporter 2 (.1) AT5G64410 137 / 3e-38 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT5G53510 114 / 6e-30 ATOPT9 oligopeptide transporter 9 (.1) AT5G53520 113 / 8e-30 ATOPT8 oligopeptide transporter 8 (.1) AT4G16370 112 / 2e-29 ATOPT3 oligopeptide transporter (.1) AT4G27730 112 / 2e-29 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT4G10770 110 / 1e-28 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT4G26590 104 / 1e-26 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 100 / 5e-25 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007770 [exp] 120 / 5e-32 AT4G27730 936 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10016631 [exp] 117 / 3e-31 AT4G26590 695 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022372 [exp] 117 / 3e-31 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10022543 [exp] 117 / 5e-31 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016632 [exp] 117 / 5e-31 AT4G26590 981 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10016633 [exp] 115 / 3e-30 AT4G26590 1087 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 114 / 4e-30 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10039075 [exp] 114 / 7e-30 AT4G16370 1304 / 0.0 oligopeptide transporter (.1) Lus10038784 [exp] 114 / 7e-30 AT4G16370 1302 / 0.0 oligopeptide transporter (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G079500 [exp] 144 / 9e-41 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.005G150400 [exp] 140 / 4e-39 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.002G109300 [exp] 128 / 4e-35 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1) Potri.003G145500 [exp] 122 / 6e-33 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 118 / 2e-31 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 115 / 2e-30 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.016G006500 [exp] 113 / 1e-29 AT4G16370 1305 / 0.0 oligopeptide transporter (.1) Potri.012G019500 [exp] 112 / 2e-29 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.001G370100 [exp] 111 / 6e-29 AT4G26590 1006 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.001G369700 [exp] 110 / 7e-29 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10010750 pacid=23148757 polypeptide=Lus10010750 locus=Lus10010750.g ID=Lus10010750.BGIv1.0 annot-version=v1.0 ATGAAGGAGCACGTGCTCATCTCGAAATTCGCCAACTCAGGGAGCGCGTTCGGGTGCGGTTCGGCGTACGCCGTCGGGATCGTGAATATCATAAAGGCGT TTTACCGGCGGAGGATTTCGTTAGATGCTAGCTGGCTCCTCATTGTCACCACCCAGCAACTGGGATCCGGTATGAACGGTCTCGGCCTAGGTGCATTCGC TCTCGATTGGTCAACCATCGCCTCCTACTTGGGCGGCCCTCTGATCAGCCCTTTATTCGCCACGGTCAATATCATTGCTGGTTATGTCCTCGTCATCTAC ATTGCGGTCCCCGTAGCTTACTGGGGGTTCGACTTGTACGGAGTGCGAAAATTCCCATTCTTCTCGGCAGAGCTCTTCACCTCCGGAGGAGCAAACTACA ACATCACGACCATTGTCAATGACAAGTTCGAGCTCGACCCTGCCAGGTACGCATCCAGCTAG
AA sequence Show only first row Show all	>Lus10010750 pacid=23148757 polypeptide=Lus10010750 locus=Lus10010750.g ID=Lus10010750.BGIv1.0 annot-version=v1.0 MKEHVLISKFANSGSAFGCGSAYAVGIVNIIKAFYRRRISLDASWLLIVTTQQLGSGMNGLGLGAFALDWSTIASYLGGPLISPLFATVNIIAGYVLVIY IAVPVAYWGFDLYGVRKFPFFSAELFTSGGANYNITTIVNDKFELDPARYASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09930		ATOPT2	oligopeptide transporter 2 (.1...		Lus10010750 [exp]	0	1
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003124 [exp]	1.0	0.9915
AT3G10320			Glycosyltransferase family 61 ...		Lus10042043 [exp]	7.8	0.8836
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10034663 [exp]	10.3	0.9520
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003125 [exp]	12.6	0.9512
					Lus10039716 [exp]	13.3	0.8114
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10005080 [exp]	14.6	0.9505
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10028814 [exp]	16.1	0.9102
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10004637 [exp]	16.3	0.9503
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10026679 [exp]	17.8	0.9486
AT2G02340		ATPP2-B8	phloem protein 2-B8 (.1)		Lus10025662 [exp]	19.3	0.9484

Compare expression of checked genes

Lus10010750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.