Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04305 342 / 2e-117 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035643 [exp] 423 / 3e-149 AT2G04305 606 / 0.0 Magnesium transporter CorA-like family protein (.1) Lus10007098 [exp] 377 / 1e-130 AT2G04305 645 / 0.0 Magnesium transporter CorA-like family protein (.1) Lus10020472 [exp] 369 / 2e-127 AT2G04305 638 / 0.0 Magnesium transporter CorA-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285300 [exp] 348 / 3e-119 AT2G04305 590 / 0.0 Magnesium transporter CorA-like family protein (.1) Potri.009G079600 [exp] 348 / 4e-119 AT2G04305 587 / 0.0 Magnesium transporter CorA-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [flax] [poplar] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Lus10010751 pacid=23148737 polypeptide=Lus10010751 locus=Lus10010751.g ID=Lus10010751.BGIv1.0 annot-version=v1.0 ATGAACCATTCGGAGGAGGCGGATAATCCTGTTCCGAAGACGGTTTCGAATTTGGTTGTGCATATTCTTGATACTCATGTGGATCATCTTCAGGATACTG TGACTAAGTTGGAGATGGAGTTGGAATCTATGGAGCTTGACCTAGATAAAGGCTGTTTCGCTATGAAGAAACAGATGCTCGACGACAGAAGATTCCCGAA AATGCACCTCAACTTGCAGCGATTGATGCAAGTGATCGCACACGAGGAACAGGTAATCCCCCGTGTGAAGGAAAAATGCTCAGGGAAAGAATGGTTCGCG AGGGAAGACATCAACGCCTTGGAAGAACTAGTCGGGAGTCTGAGGAGGCTGAAGGAAAACGTCGGGTTCATAGCAAACCGCGTGACAGCAATTCAAGCCG GTCTCGACAGCTGGCAGTCCGAGCAAATCAACAGGAAGCTCTACTACATCTCGTTCCTTTCAGTCGTCTTCCTTCCTTTATCGATCATCACCGGAGTGTT TGGCATGAATGTCGGAGGGGTTCCGTGGACGGGCCAGGATAAACCGGAGCTCAGATTCGGTTTCGAGAACGTGATGCTTCTTTGTTTGGGAATGCTGGTG CTCGTGCTGCTGTGTTTTCTGTTCCCGTCTGTTTATACATGGTTTACTTCGTGGAGGAAGAGAGTTGCCATGAGTAGAGGATGGACTATCAATAGGAGGT CGTTTCTCAAGAGGATAAAAACAAAAGAAGGTTACCTGCGCATTTGA
AA sequence Show only first row Show all	>Lus10010751 pacid=23148737 polypeptide=Lus10010751 locus=Lus10010751.g ID=Lus10010751.BGIv1.0 annot-version=v1.0 MNHSEEADNPVPKTVSNLVVHILDTHVDHLQDTVTKLEMELESMELDLDKGCFAMKKQMLDDRRFPKMHLNLQRLMQVIAHEEQVIPRVKEKCSGKEWFA REDINALEELVGSLRRLKENVGFIANRVTAIQAGLDSWQSEQINRKLYYISFLSVVFLPLSIITGVFGMNVGGVPWTGQDKPELRFGFENVMLLCLGMLV LVLLCFLFPSVYTWFTSWRKRVAMSRGWTINRRSFLKRIKTKEGYLRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04305			Magnesium transporter CorA-lik...		Lus10010751 [exp]	0	1
AT1G58070			unknown protein		Lus10019953 [exp]	1.4	0.9892
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029638 [exp]	3.0	0.9760
AT4G15760		MO1	monooxygenase 1 (.1.2)		Lus10028081 [exp]	3.3	0.9604
AT5G61350			Protein kinase superfamily pro...		Lus10000562 [exp]	3.9	0.9746
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10009872 [exp]	4.5	0.9546
AT2G03200			Eukaryotic aspartyl protease f...		Lus10025702 [exp]	5.1	0.9764
AT5G24620			Pathogenesis-related thaumatin...		Lus10023896 [exp]	5.8	0.9574
AT1G78060			Glycosyl hydrolase family prot...		Lus10019099 [exp]	8.0	0.9578
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	8.0	0.9757
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041811 [exp]	9.2	0.9543

Compare expression of checked genes

Lus10010751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.