Lus10010752 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64430 42 / 0.0004 Octicosapeptide/Phox/Bem1p family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035642 263 / 3e-87 ND /
Lus10035641 84 / 2e-18 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G285800 108 / 6e-26 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1)
Potri.009G080200 91 / 1e-19 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1)
PFAM info
Representative CDS sequence
>Lus10010752 pacid=23148702 polypeptide=Lus10010752 locus=Lus10010752.g ID=Lus10010752.BGIv1.0 annot-version=v1.0
ATGCGCCTCTTCCTATTTCCGGCGAATCCTTCTCCGCCGGCCAGCTTCGGATCCGACGGCGGCAAGTCTGACGGTTTCGTTGAGGCCTTCAATTCCGTGC
CGGTCCAAGCAAATCCCAAAGCTGCTGCTCCGGCGGGTCAAAATAATGTTGATTTCTTGTTTGGATTGCAGAAAGGAGTAGGACTAGGAGTGTCTGTTCC
AGGGCCAGGCCCAGCTGTGAAGGCGCGTGATTTCCCGGATGTGAATCTTGGATCCGGAGTCCGCGAAGATCAGGTTGTCGGGTCGGATCCGGTTAGCGTG
CAGGCACAGCTACAGAGGATGCAGATTAGGGAGCAGAAGGCGACACCGCCGCCGCAGCATAATTTAGTCGCTGTCGGTGGATACGCTGTTGATCCTGGTC
AGAAGATGCCGGCGATGGCCATGGCCCCGCCCCGAACGGAGGCGGGGAATTGGATCGAGAAACATGTTGGCGTCGGAGGAGGAGGAGGAGGAGGACTGGG
TTACGAGCAGGACGTGGAGGCTTCTTACGAAGATCCAAACTCATATCGGCAGCAGCAGAGGGCAGTACCCAATTCAGCTGATTTGGCGTCATACACGATC
GTCCCCCCACAACCGCAACAACAGCAAAACGTGTATATGCAGCCGGCTTTCCAAGGTCAACCCCCCGGTCAAGGGTACTACGTGCAGAGGATGGGTGGCG
GCGGCGGCGGAGGGGGACCCGAGATTTACCGGGAACAGCCGGTTTACAATATGTTGCCAATGTCACAGCCGCAACACCACGCGGCGGCTCCAATGGCCGG
CGGAGGAATACAGCAGATGACGATGGTGAGTTCGGGGGTTACGATGACCGCGGATGGAGGGGCAAGGTACCACCAGCAGCCAGCAGGGACGACGATGGCG
TACGATAGCCAGATGGGGAGGCAGGTGTACTACCCTGCGCAGGGGGGCATGGTGCATCACCCGCAGCAGATGGTGGGTCCTCCTCCTCCAGGCGTGGCTT
TACAGGGTATGGTGTTTAGCGGTGGCGATGTGAGGAGCGCTGCCGCCGTGGCTATGCCGACGGAGGCGGCGGCTAAGATGGTGAGCAAAGTTCCACAGAC
GTCAGTTTGA
AA sequence
>Lus10010752 pacid=23148702 polypeptide=Lus10010752 locus=Lus10010752.g ID=Lus10010752.BGIv1.0 annot-version=v1.0
MRLFLFPANPSPPASFGSDGGKSDGFVEAFNSVPVQANPKAAAPAGQNNVDFLFGLQKGVGLGVSVPGPGPAVKARDFPDVNLGSGVREDQVVGSDPVSV
QAQLQRMQIREQKATPPPQHNLVAVGGYAVDPGQKMPAMAMAPPRTEAGNWIEKHVGVGGGGGGGLGYEQDVEASYEDPNSYRQQQRAVPNSADLASYTI
VPPQPQQQQNVYMQPAFQGQPPGQGYYVQRMGGGGGGGGPEIYREQPVYNMLPMSQPQHHAAAPMAGGGIQQMTMVSSGVTMTADGGARYHQQPAGTTMA
YDSQMGRQVYYPAQGGMVHHPQQMVGPPPPGVALQGMVFSGGDVRSAAAVAMPTEAAAKMVSKVPQTSV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G64430 Octicosapeptide/Phox/Bem1p fam... Lus10010752 0 1
AT5G09620 Octicosapeptide/Phox/Bem1p fam... Lus10010753 1.0 0.9315
AT4G19950 unknown protein Lus10038358 1.4 0.9166
AT5G11810 unknown protein Lus10022300 1.7 0.9046
AT5G11260 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE ... Lus10002028 3.0 0.8631
AT1G18480 AtSLP2 Shewenella-like protein phosph... Lus10038865 3.3 0.8545
AT1G73500 ATMKK9 MAP kinase kinase 9 (.1) Lus10040128 3.9 0.8833
AT2G45630 D-isomer specific 2-hydroxyaci... Lus10041393 4.2 0.8829
AT1G71780 unknown protein Lus10016547 4.5 0.8844
AT4G13510 ATAMT1;1, AMT1;... ARABIDOPSIS THALIANA AMMONIUM ... Lus10023705 5.3 0.8820
AT2G43970 RNA-binding protein (.1.2) Lus10027080 7.3 0.8413

Lus10010752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.