Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09620 181 / 2e-55 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 167 / 3e-50 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 116 / 7e-31 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 106 / 7e-28 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G49920 96 / 1e-24 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G70640 91 / 6e-24 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT2G35050 93 / 1e-22 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G26510 89 / 1e-22 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT5G57610 92 / 3e-22 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 88 / 4e-21 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035641 [exp] 229 / 8e-78 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 164 / 3e-49 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 108 / 3e-28 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 106 / 9e-28 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 97 / 8e-25 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007952 [exp] 99 / 9e-25 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10013495 [exp] 92 / 2e-22 AT2G01190 176 / 1e-46 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10025941 [exp] 91 / 7e-22 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038159 [exp] 91 / 7e-22 AT3G24715 229 / 4e-62 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080200 [exp] 194 / 1e-60 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 189 / 6e-59 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.002G108800 [exp] 130 / 5e-37 AT5G09620 146 / 3e-39 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 118 / 2e-32 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 116 / 1e-31 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 105 / 4e-27 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 100 / 2e-25 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 99 / 6e-25 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G186500 [exp] 94 / 1e-24 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.001G052000 [exp] 97 / 4e-24 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10010753 pacid=23148715 polypeptide=Lus10010753 locus=Lus10010753.g ID=Lus10010753.BGIv1.0 annot-version=v1.0 ATGGAAAGCTACTCCTACAACTCCTCCTACCCTGATTCAGGCCACTCCTCCCCTCGATCCCGCGAAATCGACTTCGAAAACCCTCCCCCATGGGAGGACC AGTCTTCCTCCTCCTCCCTCAACTCCGCCAAGGTCAAGTTCCTGTGCAGCTACGGCGGAAAGATCCACCCTCGCCCCCACGACAACCAGCTCGCCTACAT CGGCGGCGACACCAAGATCCTCTCCGTTGACCGCAACATCAAGTTCTCCTCCCTCATCTCCAAGCTCTCCGCTCTCTCCGGCGACGGCGTCGACATGTCC TTCAAGTACCAGCTCCCCGGTGAGGATCTCGACGCCTTGATCTCCGTCACCAACGACGACGACCTCGAGCACCCGGGGCACCAGCGTCACCGACCCCGCT CGCCAGTCTCGCGCCTCCGCTAA
AA sequence Show only first row Show all	>Lus10010753 pacid=23148715 polypeptide=Lus10010753 locus=Lus10010753.g ID=Lus10010753.BGIv1.0 annot-version=v1.0 MESYSYNSSYPDSGHSSPRSREIDFENPPPWEDQSSSSSLNSAKVKFLCSYGGKIHPRPHDNQLAYIGGDTKILSVDRNIKFSSLISKLSALSGDGVDMS FKYQLPGEDLDALISVTNDDDLEHPGHQRHRPRSPVSRLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10010753 [exp]	0	1
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Lus10010752 [exp]	1.0	0.9315
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10023705 [exp]	3.2	0.8782
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10000196 [exp]	6.0	0.8458
AT5G11810			unknown protein		Lus10022300 [exp]	7.3	0.8386
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040127 [exp]	8.5	0.8371
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029231 [exp]	15.5	0.8271
AT3G02510			Regulator of chromosome conden...		Lus10017581 [exp]	16.1	0.8112
AT4G10265			Wound-responsive family protei...		Lus10039754 [exp]	16.7	0.8100
AT4G19950			unknown protein		Lus10038358 [exp]	17.2	0.8328
AT2G46620			P-loop containing nucleoside t...		Lus10030220 [exp]	17.2	0.8454

Compare expression of checked genes

Lus10010753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.