Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64390 262 / 6e-76 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT1G51580 148 / 2e-37 RNA-binding KH domain-containing protein (.1) AT5G09560 137 / 1e-33 RNA-binding KH domain-containing protein (.1) AT5G15270 127 / 2e-30 RNA-binding KH domain-containing protein (.1.2) AT2G22600 125 / 1e-29 RNA-binding KH domain-containing protein (.1) AT5G53060 92 / 5e-19 RNA-binding KH domain-containing protein (.1.2) AT5G46190 88 / 8e-18 RNA-binding KH domain-containing protein (.1) AT1G14170 85 / 4e-17 RNA-binding KH domain-containing protein (.1.2.3) AT4G18375 69 / 6e-12 RNA-binding KH domain-containing protein (.1.2) AT3G04610 61 / 2e-09 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035640 [exp] 1159 / 0 AT5G64390 337 / 8e-104 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10030689 [exp] 125 / 5e-30 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10034831 [exp] 121 / 2e-28 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1) Lus10007236 [exp] 121 / 4e-28 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10005232 [exp] 119 / 7e-28 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10028237 [exp] 115 / 3e-26 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10038509 [exp] 96 / 3e-20 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10012725 [exp] 93 / 2e-19 AT2G22600 216 / 1e-61 RNA-binding KH domain-containing protein (.1) Lus10005915 [exp] 91 / 8e-19 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G042500 [exp] 560 / 0 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.007G116300 [exp] 457 / 4e-150 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.007G012000 [exp] 169 / 6e-45 AT2G22600 325 / 3e-104 RNA-binding KH domain-containing protein (.1) Potri.007G011900 [exp] 159 / 5e-40 AT2G22600 295 / 2e-87 RNA-binding KH domain-containing protein (.1) Potri.002G112200 [exp] 139 / 5e-34 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 132 / 5e-32 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.004G123400 [exp] 129 / 2e-31 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 121 / 1e-28 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 106 / 2e-23 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 105 / 2e-23 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10010754 pacid=23148749 polypeptide=Lus10010754 locus=Lus10010754.g ID=Lus10010754.BGIv1.0 annot-version=v1.0 ATGGACGCTAGCTATCTCTCTCTCCCTTCCAAACGAACCATTCATCACCCCGCCGGAGGAATGTCCGACTCCAACAAACGTTTCAAGCAATTCCCTCCTT CTCCCAATCAACATCATCATCATCAGCCAGTGCCTGCTGGACACGTTTGCTTCCGTCTCCTATGTCACTCCTCCCGCGTCGGTGGTATCATCGGCAAGTC CGGCAGCATAGTGAAGCAGCTGGTGCAGCAGACCGGCGCTAAGATCCGTGTCGAGGAGGCTCCCGTTGACTGCCCTGATCGAGTTATCTCCGTACTCGCT CCCGCCGCAATCAGCTCAAGGATTTCATTGCCAGCAAGCAATGGCTTCGCCGATTGTGAATTCGATGTGTCTAGAGGTCAGGAAGCGCTGGTGAAGGTAT TGGAGAGGGTTTTCGAAGTTGCTGCCGAGACTGATGGAGGGCGTCTACCTGAAGGGAGGGTTGTGTCTTGTAGATTGCTGGCTGAGGGGACCCACGCGGG TTCTGTCATCGGTAAGGGAGGCAAGGTTGTGGAGAAGATTAAGAAGGATTTTGGTGTTAAAATTAGGGTTATGAAGGATAAGTTGCCTCTTTGTGCTGCT TCAATGGAGGAGATTATTGAGATTGAAGGGGAAGTTATGGGAGTGAAGAGGGCACTAGTTTCAGTCTCTCGCTGTCTCCAAGACTCTCAACTATTTGATA GGACGAGAATGTCTGGCAGAAAACCTGTTGAGGTGGTTCCAAGAGAGTCGCCTGATACTCGGCTGAATATTCCATCACAGCATGCCTCAATTCCAGGCTC TGTATCAACTTCAGGGGGTCATTCTTTGTCGCTGGAGTCTGACAGAAACCGTGATACTAGGACGTTACTGGAGGAAGTTGCTTTCAGAATTCTTTGTTCC AATGATATAGTTGGTGGTATTATTGGAAGTGGTGGAAGCATTATCAGGTCTCTTCAAGATGAGACAGGCGCTTCTATAGTTATTGGACCCTCTGTGCCTG ATTGTGATGAAAGATTAATCACCATTGCAGCATCAGAGAACCCAGACTCTCAGTACTCTGCTACACAGAAGGCCACAGTCCTTGTTTTCTCAAGAGCAGT AGATGCTGGGATTGAGAAGGGGCTAGGAGGCTCCTTTAAGGGATCCCCTGTTACTGCTAGGATCGTAGTCTCATCAGCCAAAGTTGGTTGTTTGTTGGGG AAAGGAGGCACGATAGTTTCAGAAATGCGCAAGGATACTGGTGCTGGAATACGTGTATTAGGACATGACCAGCTGCCGAAGTGTGTGCAGGAGAATGATC AAGTGATTTCAGGAGAATTGGTTAATGTAAGAGATGCAATCTACCATGTTACTGGGAGACTCCGAGATAACCTGTTCTCTGGCTTGCTGGGTAGTTCTAT GACAGGGAGCTCACTTTTGTCTACTAAGACTAATCCCTATGGAAGTGTGAGGGATCTTCCAAGGATGTCTCTAAAGGAACCGTTGCGAGACTCGTCAAGG GAATCTTTCATGGACTTGTATAGTTATCAGCCGGTAAACCCCTCAATGGAATCTTATGTGGACCGGTATCGGTATCCCTCCGGGGAGCCAGCGGGGGAAT CATTCAACCAGCCGTTGATGAATTCTTTAAGGGATCCTTTGAGGGACTCATTCTCAGATCCTCTTGGGGATTCCTTGAGATACCCACTTAGGGATACATT TAGAGATCCATTAAGAAATTCTCTGAGAGATCCTACTCTTTCCTCACATGTGTCAGTTGGTACTTCTCATAGTTTAGGCCGACACTCTAATCTTGGACAC GGCATAGACCATCTTGGACTTTCTCATGGTCGGGACGAATCCCAATCACCAAAGTCATGGGCACACCAGATAACTGGGGCAAATACAAGAGGCTTCACTG ATGTTAACAGAGGATTCTCTTTCTTCAAAGGTGGCTTTGAATCGGCCAGGATCATTAATCCGTTAAGTGTGATTGTCATCATCAGTTCCAGCCGGTCTGC AATTGTCACAAACACGACTGTTGAGATTGTGGTACCTGAAAGCGTTATCAGCTGTGTATATGGTGAAAACGGCAACAATCTGGTACGTTTGAGACAGATC TCAGGTGCCAAGGTTATAGTTCATGAACCTCGTGTAGGATCAAGTGACAGGATTATTGTAATATCTGGGACACCTGATGAAACTCAGGCAGCACAGAGCC TTCTTCAAGCATTTATCCTGACAGGACAATCTTGA
AA sequence Show only first row Show all	>Lus10010754 pacid=23148749 polypeptide=Lus10010754 locus=Lus10010754.g ID=Lus10010754.BGIv1.0 annot-version=v1.0 MDASYLSLPSKRTIHHPAGGMSDSNKRFKQFPPSPNQHHHHQPVPAGHVCFRLLCHSSRVGGIIGKSGSIVKQLVQQTGAKIRVEEAPVDCPDRVISVLA PAAISSRISLPASNGFADCEFDVSRGQEALVKVLERVFEVAAETDGGRLPEGRVVSCRLLAEGTHAGSVIGKGGKVVEKIKKDFGVKIRVMKDKLPLCAA SMEEIIEIEGEVMGVKRALVSVSRCLQDSQLFDRTRMSGRKPVEVVPRESPDTRLNIPSQHASIPGSVSTSGGHSLSLESDRNRDTRTLLEEVAFRILCS NDIVGGIIGSGGSIIRSLQDETGASIVIGPSVPDCDERLITIAASENPDSQYSATQKATVLVFSRAVDAGIEKGLGGSFKGSPVTARIVVSSAKVGCLLG KGGTIVSEMRKDTGAGIRVLGHDQLPKCVQENDQVISGELVNVRDAIYHVTGRLRDNLFSGLLGSSMTGSSLLSTKTNPYGSVRDLPRMSLKEPLRDSSR ESFMDLYSYQPVNPSMESYVDRYRYPSGEPAGESFNQPLMNSLRDPLRDSFSDPLGDSLRYPLRDTFRDPLRNSLRDPTLSSHVSVGTSHSLGRHSNLGH GIDHLGLSHGRDESQSPKSWAHQITGANTRGFTDVNRGFSFFKGGFESARIINPLSVIVIISSSRSAIVTNTTVEIVVPESVISCVYGENGNNLVRLRQI SGAKVIVHEPRVGSSDRIIVISGTPDETQAAQSLLQAFILTGQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10010754 [exp]	0	1
AT3G14460			LRR and NB-ARC domains-contain...		Lus10024173 [exp]	1.0	0.8946
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	5.8	0.8931
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	6.5	0.8871
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	8.9	0.8775
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	9.8	0.8771
AT1G17450			B-block binding subunit of TFI...		Lus10006533 [exp]	10.4	0.8509
AT3G13225			WW domain-containing protein (...		Lus10005845 [exp]	10.5	0.8773
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	12.1	0.8751
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	15.2	0.8749
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	19.0	0.8696

Compare expression of checked genes

Lus10010754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.