Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 82 / 1e-17 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT3G18960 72 / 9e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 70 / 5e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 58 / 6e-10 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 56 / 1e-08 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 54 / 3e-08 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G31640 44 / 0.0001 B3 REM5 transcriptional factor B3 family protein (.1) AT3G53310 43 / 0.0001 B3 REM20 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010759 [exp] 332 / 8e-114 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 306 / 4e-100 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 157 / 2e-47 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1) Lus10025669 [exp] 114 / 9e-29 AT3G18990 100 / 1e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012046 [exp] 106 / 9e-26 AT3G18960 82 / 7e-18 AP2/B3-like transcriptional factor family protein (.1) Lus10035634 [exp] 94 / 5e-21 AT5G09550 778 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Lus10027942 [exp] 89 / 3e-20 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027943 [exp] 90 / 5e-20 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 84 / 2e-18 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 99 / 2e-23 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 91 / 1e-20 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G147000 [exp] 89 / 1e-19 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 76 / 3e-15 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 74 / 2e-14 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 67 / 9e-13 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 61 / 2e-10 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 55 / 8e-09 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 55 / 2e-08 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 53 / 2e-07 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10010756 pacid=23148717 polypeptide=Lus10010756 locus=Lus10010756.g ID=Lus10010756.BGIv1.0 annot-version=v1.0 ATGGCTTCTTTGCATGCGCCCAAGAACCGTTCAAGAACTTCTTCTCCATCTACCATGAACAAATTACCACACACAAGTTTCTTCAGAATCATCCTCCCAT ACATCCTCCAACAGAACAAGTTGAAGCTGCCGTTGAAATTTGTTCGAAGATACGGATCGGAAATTTCGTCTATTGCCAAACTGTCCCTACCTAACGGGCA TGCATGGAAGGTTGGTGTGGAGAAGAAAAGGAAGGGAGAGGAAATGTGGTTAAGCGACGGGTGGGGTGAGTTTATGGATCATCATTCCATTTCCAAAGGA TTCTTTCTGGTGTTTAAATACAGAGGATACTCTGCTTTCGATGTCGAAATGTTCGATCTTACCACTTCCTCAATATCCTATTCTCCTCCTCCTCCTCAAG AAAGTGGTTTTCCGAATATTGTTGTGATTTCGGACGACGAAAAAGATGATAAAATTGGTGGTGGTGAGATTGAGAAGACGCTGGAACGTCTGAAAGCAAG CGGGATAGTAACTGGCCGTCAGCATTCGTTCAATAGGAAGCTAAGGGAGATGTACAAAAAATGCAAGAAGGGAGTAGAGGATGCGATACTAGCATCCAAT CCCGCATTTCCTAGTTTCATCATCCTCCTCAGCTCCGATCACGTTGGAAGCAAAGCCAGGCCTGTGATACCACTCTCATTTGCGAGAGATCATATTCCGG ACAGAGGGGAGACCAGTACCGTGGTTCTTCAGATGGGGCAACATGGGAAGTCGGTTAGGCAGTGGAGTGTTCAAATGACGCGGCCAGAGACGTCGGCATT ATTTCGTTCTGTGACTTTAGGACTAGGATGGCGACAGTTCAAGGACGACAACAATTTGGGAGTGGGAGATGTTTGCCTGTTTCACCTCGTCTCTCCGGAG GACCTTGTTTTCGATGTCTCTATATTCCCCGCAGCCAAGTGA
AA sequence Show only first row Show all	>Lus10010756 pacid=23148717 polypeptide=Lus10010756 locus=Lus10010756.g ID=Lus10010756.BGIv1.0 annot-version=v1.0 MASLHAPKNRSRTSSPSTMNKLPHTSFFRIILPYILQQNKLKLPLKFVRRYGSEISSIAKLSLPNGHAWKVGVEKKRKGEEMWLSDGWGEFMDHHSISKG FFLVFKYRGYSAFDVEMFDLTTSSISYSPPPPQESGFPNIVVISDDEKDDKIGGGEIEKTLERLKASGIVTGRQHSFNRKLREMYKKCKKGVEDAILASN PAFPSFIILLSSDHVGSKARPVIPLSFARDHIPDRGETSTVVLQMGQHGKSVRQWSVQMTRPETSALFRSVTLGLGWRQFKDDNNLGVGDVCLFHLVSPE DLVFDVSIFPAAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010756 [exp]	0	1
					Lus10011061 [exp]	3.2	1.0000
					Lus10010609 [exp]	4.2	1.0000
					Lus10009800 [exp]	7.2	1.0000
AT3G11680			Aluminium activated malate tra...		Lus10013347 [exp]	9.8	1.0000
					Lus10010778 [exp]	10.0	1.0000
					Lus10011496 [exp]	11.8	1.0000
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10012337 [exp]	12.0	1.0000
					Lus10034870 [exp]	12.3	1.0000
					Lus10014761 [exp]	14.7	1.0000
					Lus10011848 [exp]	14.7	1.0000

Compare expression of checked genes

Lus10010756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.