Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31970 325 / 1e-106 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31940 320 / 3e-104 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31950 275 / 3e-87 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 263 / 2e-82 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT3G25180 249 / 2e-77 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT5G07990 203 / 7e-60 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G23190 192 / 4e-55 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT4G37320 187 / 6e-54 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37400 187 / 1e-53 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT4G37330 186 / 2e-53 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035635 [exp] 722 / 0 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011657 [exp] 572 / 0 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 568 / 0 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10028217 [exp] 370 / 1e-126 AT4G31970 292 / 2e-95 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10007837 [exp] 332 / 3e-109 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032745 [exp] 331 / 8e-109 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038203 [exp] 300 / 1e-96 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Lus10011658 [exp] 298 / 7e-96 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025923 [exp] 271 / 2e-85 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038000 [exp] 438 / 3e-150 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038100 [exp] 436 / 1e-149 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 435 / 4e-149 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 420 / 2e-143 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037600 [exp] 416 / 6e-142 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 416 / 6e-142 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 415 / 2e-141 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037500 [exp] 347 / 8e-115 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 342 / 5e-113 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.016G008500 [exp] 327 / 6e-107 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10010758 pacid=23148769 polypeptide=Lus10010758 locus=Lus10010758.g ID=Lus10010758.BGIv1.0 annot-version=v1.0 ATGGATTTCATACCCTCAGTTTCTATCCTTTTCATCATACTACCCTCTCTCATTTTCTTCTACGTTCTCTTCCGACTATCAACCTCAGTCGTCGGCAACA ACAAGAACCTAAACGCACCGCTTCAGGCCGGCGGCGCATGGCCCATAATCGGGCATCTACATCTCTTAGGCGGACCGCGGCCAGCGCACATAGTATTGGG CCAGATGGCAGACAAATACGGCCCATTGTTCACCATCCGAATGGGCGTCCACACGGCTGTGGTAGTCAACAACTCGGAGCTGGCGAAGGAGTGTTTGACC ACACACGACCAGAATTTTGCGGATAGACCCGCAACCTTAGCCATGGATCTACTCGGTTACAAGAGATCCATGTTAGGGTTCAGCCCATACGGGCCTTACT GGCGAGAAACCCGGAAGATTGCCACTCTTGAATGTCTCTCCTCCCACCGCCTAAATTTGCTCAAACACGTGAGGGAAGCGGAGGTCAACGTCGCGATAAA AGAGCTGTACGGGTATTGGTGCAGTAACGGACGAGACGGTGTCGTTTCGGTGGAGATGACCGGCTGGTTTGGGGACATTGCGTTGAACGTTATACTGAAG ATGATCGTAGGGAAATCTATCGGGTACTTGAAGCGAGGAGAAGATGGTGTTAGACTGAAGAATGTGTTGAAAAGTTTCTTTGATCTTTCTGGAAGGTTCT TGGTGGCGGACGGTGTACCTTATCTGAGGTGGTTGGACGTGGGAGGGTTCGAGAAGGTGATGAGGAAGACGGCGGAGGAGATGGACGTTGTGGTGGGAGA GTGGCTGAAGGAGCACAAGGCCAAACGAGATTCCGGCGGCGGGGTCAAGGCGGAGGATGATTTCATGGATGTTATTCTGAATCTTGTCGGGGATGAAGAG CCTTATTTTGGCGGGTGCAGACACAACAACATTGACAATGACCTGGTTGCTCGCATTACTCATCCTGATGTATTGCATAAAGTCCAAATCGAGCTAGACA ACAACATAGGTAGCCAAAGACAAGTTCAAGAATCCGATCTCCACAACTTAGTTTATTTGAATGCAGTCGTCAAAGAAACCCTCCGCTTATACCCACCTGC TCCTCTTGCCTTACCACACCAAGCCATTGAAGATTGCACAGTCGTTGGTTGCCTGATCCGAAAAGGGACAACACTTCTAATCAACATATCTAAAATCCAG CGTGACCAACGATTTTGGCCTCAAGCAGACAAGTTTGAACCGGACCGGTTCCTCTCGACACACAAGGACGTTGACGTGAAGGGTAAAAACTGCAAGCTGA TGCCATTTGGAAGCGGGCGGAGGATGTGA
AA sequence Show only first row Show all	>Lus10010758 pacid=23148769 polypeptide=Lus10010758 locus=Lus10010758.g ID=Lus10010758.BGIv1.0 annot-version=v1.0 MDFIPSVSILFIILPSLIFFYVLFRLSTSVVGNNKNLNAPLQAGGAWPIIGHLHLLGGPRPAHIVLGQMADKYGPLFTIRMGVHTAVVVNNSELAKECLT THDQNFADRPATLAMDLLGYKRSMLGFSPYGPYWRETRKIATLECLSSHRLNLLKHVREAEVNVAIKELYGYWCSNGRDGVVSVEMTGWFGDIALNVILK MIVGKSIGYLKRGEDGVRLKNVLKSFFDLSGRFLVADGVPYLRWLDVGGFEKVMRKTAEEMDVVVGEWLKEHKAKRDSGGGVKAEDDFMDVILNLVGDEE PYFGGCRHNNIDNDLVARITHPDVLHKVQIELDNNIGSQRQVQESDLHNLVYLNAVVKETLRLYPPAPLALPHQAIEDCTVVGCLIRKGTTLLINISKIQ RDQRFWPQADKFEPDRFLSTHKDVDVKGKNCKLMPFGSGRRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10010758 [exp]	0	1
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	3.7	0.9479
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	4.1	0.9487
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	8.5	0.9407
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	11.4	0.9452
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	12.6	0.9342
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10035865 [exp]	13.4	0.8763
AT5G60330			unknown protein		Lus10018274 [exp]	15.2	0.9451
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022506 [exp]	15.5	0.9438
					Lus10018536 [exp]	15.7	0.8516
AT3G61660			unknown protein		Lus10005152 [exp]	17.1	0.7487

Compare expression of checked genes

Lus10010758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.