Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 89 / 4e-20 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G01580 84 / 4e-19 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 83 / 1e-18 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 72 / 6e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 67 / 2e-12 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 57 / 2e-09 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G31640 54 / 5e-08 B3 REM5 transcriptional factor B3 family protein (.1) AT4G31680 49 / 2e-06 B3 REM8 Transcriptional factor B3 family protein (.1) AT2G16210 47 / 3e-06 B3 Transcriptional factor B3 family protein (.1.2) AT3G53310 47 / 6e-06 B3 REM20 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010756 [exp] 358 / 4e-124 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 348 / 2e-116 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002425 [exp] 194 / 1e-61 AT4G01580 85 / 1e-20 AP2/B3-like transcriptional factor family protein (.1) Lus10025669 [exp] 138 / 2e-37 AT3G18990 100 / 1e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012046 [exp] 121 / 3e-31 AT3G18960 82 / 7e-18 AP2/B3-like transcriptional factor family protein (.1) Lus10035634 [exp] 115 / 2e-28 AT5G09550 778 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Lus10027943 [exp] 112 / 1e-27 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 107 / 6e-27 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 105 / 3e-26 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 119 / 1e-30 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 101 / 3e-24 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G147000 [exp] 86 / 9e-19 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 84 / 5e-18 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 79 / 4e-17 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 79 / 4e-16 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 71 / 2e-14 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 71 / 2e-13 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 59 / 2e-09 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 56 / 2e-08 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10010759 pacid=23148705 polypeptide=Lus10010759 locus=Lus10010759.g ID=Lus10010759.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTGCATGTGCCCAAGACCCGTTCAAGATCTTCCATACGCAAATTACCACACACAAGTTTCTTCAGAATCATCCTCCCATACATTCTCCAAC TAAACAAATTGAAGCTGCCGCTGAAATTTGTTCGAAGATACGGATCCGAACTTTCGTCTACTGCCAAACTGTGCTTACCGAATGGGCATGAATGGAACGT TGGTGTAGAGAAGAACATGAAAGGAGATGGCAATAAGAAGGACGAAATCTGGTTAAGCGAGGGGTGGGGTGAATTTATGGAACATCATTCCATTTCCAAA GGATTCATTCTTGTGTTTAAATACAGAGGATACTCTGTTTTCGATGTTGAGATCTTCGACCTCACCACTTGCTCAATTTCCTATCCTCCTCCTCCTGCTG CAGAAAGTACTGGTTTCTCGAATATTGTTGTGATTTCGGATGACGAAGACGAAGAAGATGATAAATTTGGTGGTGGTGATGAGATGGAGAAGACGCTGGA ACGTCTAAAATCAAGCGGGGTGGTAACTGATCACTGGCTCAAGGCGAGGATAAGGAAGATGCACATGAAAAGCAAGAAGGGAATAGAGGATGCAATAGTA GCATCAAATCCCACATATCCTAATTTCATCATCGTCCTGAGTTCCAACCAGATTCGATGCAAATCCAGGCCGGTGATACCGATTTTATTTGCGAGAGAGC ATATTCTCAAGGGAGGGAATGGTGGTACTACTAGTACCACTGTGGTTCTTCAGATGGGGGAAGGTGCTGCAGCAAGTAAGCAGTGGATTGTGGAACTGGT GAAGAGGAGGAGGAGGGTGAATTTTGGACCAGCAGGATGGCGACAGTTCAATGATGACAACAATTTGAGGGAGGGAGATGTTTGTCTGTTTCACCTCGTC TCTCCAGTGGACCTTGTTTTCAATGTCTCTATATTTCCTACATCCCACTGA
AA sequence Show only first row Show all	>Lus10010759 pacid=23148705 polypeptide=Lus10010759 locus=Lus10010759.g ID=Lus10010759.BGIv1.0 annot-version=v1.0 MASLHVPKTRSRSSIRKLPHTSFFRIILPYILQLNKLKLPLKFVRRYGSELSSTAKLCLPNGHEWNVGVEKNMKGDGNKKDEIWLSEGWGEFMEHHSISK GFILVFKYRGYSVFDVEIFDLTTCSISYPPPPAAESTGFSNIVVISDDEDEEDDKFGGGDEMEKTLERLKSSGVVTDHWLKARIRKMHMKSKKGIEDAIV ASNPTYPNFIIVLSSNQIRCKSRPVIPILFAREHILKGGNGGTTSTTVVLQMGEGAAASKQWIVELVKRRRRVNFGPAGWRQFNDDNNLREGDVCLFHLV SPVDLVFNVSIFPTSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010759 [exp]	0	1
AT5G61850	LFY	LFY3, LFY	LEAFY 3, floral meristem ident...		Lus10016732 [exp]	1.0	0.9999
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10026079 [exp]	2.0	0.9982
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018195 [exp]	4.0	0.9845
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	6.5	0.9864
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	7.0	0.9861
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10035793 [exp]	7.1	0.9823
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	7.9	0.9833
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	8.5	0.9796
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	8.8	0.9823
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10004008 [exp]	9.2	0.9753

Compare expression of checked genes

Lus10010759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.