Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57190 825 / 0 PSD2 phosphatidylserine decarboxylase 2 (.1) AT4G25970 821 / 0 PSD3, PSD2 phosphatidylserine decarboxylase 3 (.1) AT4G16700 62 / 5e-10 PSD1 phosphatidylserine decarboxylase 1 (.1) AT5G08580 42 / 0.0007 Calcium-binding EF hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009324 [exp] 864 / 0 AT5G57190 891 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10015838 [exp] 562 / 0 AT5G57190 561 / 0.0 phosphatidylserine decarboxylase 2 (.1) Lus10035633 [exp] 466 / 6e-161 AT5G57190 360 / 2e-119 phosphatidylserine decarboxylase 2 (.1) Lus10015839 [exp] 363 / 4e-123 AT4G25970 381 / 4e-130 phosphatidylserine decarboxylase 3 (.1) Lus10007807 [exp] 52 / 6e-07 AT4G16700 515 / 0.0 phosphatidylserine decarboxylase 1 (.1) Lus10035632 [exp] 47 / 3e-05 AT3G62870 453 / 2e-163 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G061700 [exp] 886 / 0 AT5G57190 956 / 0.0 phosphatidylserine decarboxylase 2 (.1) Potri.001G172400 [exp] 883 / 0 AT4G25970 966 / 0.0 phosphatidylserine decarboxylase 3 (.1) Potri.003G078300 [exp] 47 / 5e-05 AT4G16700 566 / 0.0 phosphatidylserine decarboxylase 1 (.1) Potri.005G215700 [exp] 43 / 0.0001 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.002G047300 [exp] 43 / 0.0002 AT3G22930 171 / 3e-54 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02666 [flax] [poplar] PS_Dcarbxylase Phosphatidylserine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10010761 pacid=23148758 polypeptide=Lus10010761 locus=Lus10010761.g ID=Lus10010761.BGIv1.0 annot-version=v1.0 ATGGCGGCGAAGCTTCACATTCGCAGTAAACACGGAAGTCGTCGTCGCCGCCTTCGCAATCGTCTGTTTCGCCGGTCCAGTTCGAAGAGGAATGGCTCCG GGTCCACCGCTGGACACGGTAAAAACAGCAACAAGCTAGTCTCTGAGGACGATTTTGCTGGAATTGCGCTTCTTACTCTCATCGGCGCGGAAATGAAGTT CAAAGACAAGTGGCTTGCTTGCGTTTCATTGGGTGAACAGACTTTCCGTACAGAGGTTTCCGATCAGTTAAGGCTCTGGCTCCCTACCAACAACACTAAT ATATCCGATCAGATCGTCTTGACTGATATGCCTATATGGAACTCGGAAAAAAAGGTCCTTCTGGAGAAAAATGGGCCTCATATTGCCAGGATCTCTGTAT TTGAGACTAACAGATTATCAAAGAACAATCTTATAGGTTACTGTGAGATAGATCTGCTGGAATTCTTGACTCAGGATTTTGATTCAGATGCTGAAGCTTT TGACCTTGTTGATCCATCATCATCTCATATTGCGGTTGGAAAAATTACTCTATCATGTGATGTTGAGGATCCACTTGAGACCGAGAAAAATTTCGCACGG CGCATCTTGTCCATTGTGGACTACAATGAAGATGGATTACTTTCATTTCCAGAATTTTCAGACTTGATTAATGCTTTCGGGAATAAGCTGGCGGATAACA AGAAAGAGGAGCTTTTCAAAGCTGCAGACAAGAACCAGGATGGCGTTGTGAGCTTAGATGAGTTGGCTGATCTCCTTGCCAATCAACAAGAAAAGGAGCC TTTAATAAACTGTTGTCCTGTTTGTGGCGAGATTCTTCAAGTTTCTGACAAGCTGAGCACAGTAGTGCATTTGAGTCTTTGTTTTGATGAGGGGACGGGA AACCAAGTTATGACAGGAGGATTTTTGACTGATAAACAAGCTTCATACGGCTGGATGTTTAAACTAAGTGAATGGGCTCACTACTCATCTTATGATTTTG GTTTGAACTCGGGATCAAGTTCCTCACATATTCTGGTATTTGATCGGAAGACAAAGAGGCTTGTGGAAGAATTAATTGATGGGAAGATAGTTCTATCAAT GAGAGCAATTTACCAGTCCAAGATTGGACTTCGCCTCATGGACAAAGTTAATGAAGCTGAAGCTCTTTTGTTTGCTGAATGCTGTAATTTTTTTCGGCAG GATCAAATCAAGTTGGCTGAAGTTAAGCACCCTTTGGATCATTTCAAGACCTTCAATGATTTCTTTATAAGAGAATTAAAGCAAGGCGCTAGACCAATTG CCATGATGGAACGGAATGATATTGCTGTATGTGCGGCTGATTGTCGTCTAGTAGCATTCAAATCACAAGAAGACGCTAAAAGATTTTGGATAAAGGGCAA AAAGTTCTCTATTGAAGGCCTCTTGGGAAACAAGATATGTGCCAAGGCTTTCATGAATGGAACTGTAGTTATATTTCGGTTGGCACCTCAGGATTATCAC CGATTTCATCTTCCAGTGTCTGGAACCGTTGATAAATTCGAAGATATTTCAGGATGTTTGTACACGGTAAATCCTATTGCAGTGAATAGTAAGTATTGCA ATGTCTTCACAGAGAACAAGCGTGTTGTATCTGTTATTACTACTGCCGAATTCGGAAAGGTGGCATTTGTTGCAATTGGAGCAACCATGGTTGGTAGCAT CACATTCTCGAAGAAAGCCGGGGACTACGTAAACAAGGGAGATGAGGACGCAATTCGGATTGATGAAGACCTCCTGGCAAACAGTGCAAGGTCACTTGAA ACCTTGGTTCAAGTTGGAATGACATTGGGCGTTGCCACGAAGAACTGA
AA sequence Show only first row Show all	>Lus10010761 pacid=23148758 polypeptide=Lus10010761 locus=Lus10010761.g ID=Lus10010761.BGIv1.0 annot-version=v1.0 MAAKLHIRSKHGSRRRRLRNRLFRRSSSKRNGSGSTAGHGKNSNKLVSEDDFAGIALLTLIGAEMKFKDKWLACVSLGEQTFRTEVSDQLRLWLPTNNTN ISDQIVLTDMPIWNSEKKVLLEKNGPHIARISVFETNRLSKNNLIGYCEIDLLEFLTQDFDSDAEAFDLVDPSSSHIAVGKITLSCDVEDPLETEKNFAR RILSIVDYNEDGLLSFPEFSDLINAFGNKLADNKKEELFKAADKNQDGVVSLDELADLLANQQEKEPLINCCPVCGEILQVSDKLSTVVHLSLCFDEGTG NQVMTGGFLTDKQASYGWMFKLSEWAHYSSYDFGLNSGSSSSHILVFDRKTKRLVEELIDGKIVLSMRAIYQSKIGLRLMDKVNEAEALLFAECCNFFRQ DQIKLAEVKHPLDHFKTFNDFFIRELKQGARPIAMMERNDIAVCAADCRLVAFKSQEDAKRFWIKGKKFSIEGLLGNKICAKAFMNGTVVIFRLAPQDYH RFHLPVSGTVDKFEDISGCLYTVNPIAVNSKYCNVFTENKRVVSVITTAEFGKVAFVAIGATMVGSITFSKKAGDYVNKGDEDAIRIDEDLLANSARSLE TLVQVGMTLGVATKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10010761 [exp]	0	1
					Lus10033269 [exp]	3.5	0.9515
AT5G18150			Methyltransferase-related prot...		Lus10020287 [exp]	4.9	0.9340
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	5.5	0.9405
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	7.3	0.9337
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	9.2	0.9339
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	9.3	0.9379
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	13.9	0.9291
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10029495 [exp]	14.1	0.9275
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	14.4	0.9216
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	14.7	0.9239

Compare expression of checked genes

Lus10010761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.