Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45670 129 / 2e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 122 / 7e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 122 / 8e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G30140 121 / 1e-33 CDEF1 CUTICLE DESTRUCTING FACTOR 1, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 120 / 3e-33 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G33811 120 / 5e-33 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19060 119 / 6e-33 SGNH hydrolase-type esterase superfamily protein (.1) AT2G19010 118 / 2e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 118 / 3e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 101 / 7e-26 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015842 [exp] 166 / 9e-51 AT5G45670 325 / 7e-110 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000893 [exp] 129 / 2e-36 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 126 / 3e-35 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 126 / 3e-35 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029280 [exp] 124 / 2e-34 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002772 [exp] 121 / 2e-33 AT1G29670 275 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002770 [exp] 121 / 1e-32 AT1G29670 307 / 2e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012002 [exp] 119 / 1e-32 AT5G45670 295 / 5e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 118 / 3e-32 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060700 [exp] 132 / 3e-38 AT1G29660 306 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 132 / 8e-38 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G075900 [exp] 131 / 2e-37 AT1G29660 318 / 3e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 131 / 2e-37 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008904 [exp] 129 / 2e-37 AT4G18970 246 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G008100 [exp] 131 / 3e-37 AT1G29670 356 / 4e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G008100 [exp] 130 / 3e-37 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 130 / 4e-37 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.003G213700 [exp] 130 / 7e-37 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 130 / 7e-37 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10010762 pacid=23148709 polypeptide=Lus10010762 locus=Lus10010762.g ID=Lus10010762.BGIv1.0 annot-version=v1.0 ATGAGAGTCGGGGTACCATGTCGGCGTCAGAAGACGGAAGAGGTCGATGAAGATGAAGAAGAAGAAGAAGCGGAAAGAGCCTGCGGCAGCTCTGAGGTTT TGAAGGCTACCTTCTCAGTTAGTCGTAGTAATGGTGTCCGAGGCGAGCCGGAAGTGCCCTGTTACTTCATCTTTGGGGATTCTCTATACGACAGCGGCAA CAACAACCCTTTGGCGGCGACTCCCAAATCCAATTACCTCCCTTACGGCATCGACTTCCCCACCGGTCCTACCGGAAGATTCTCCAATGGTTACAATGCC GCCGATGCTTTCGCTGAGCTTTTGGGATTTCGACATCTCATCCCGCCATTCGCCACTGCTACCTGGAATCAACTACGGCATGGCGTGAACTATGCTTCCG GCGGTGCTGGCATTCGCGACGAAACCTCGTATACCCAAGCATGTCTAATTTTAATGGATAGAGGGGGGAAAAGGCAGAGTATTGTTTGTTAG
AA sequence Show only first row Show all	>Lus10010762 pacid=23148709 polypeptide=Lus10010762 locus=Lus10010762.g ID=Lus10010762.BGIv1.0 annot-version=v1.0 MRVGVPCRRQKTEEVDEDEEEEEAERACGSSEVLKATFSVSRSNGVRGEPEVPCYFIFGDSLYDSGNNNPLAATPKSNYLPYGIDFPTGPTGRFSNGYNA ADAFAELLGFRHLIPPFATATWNQLRHGVNYASGGAGIRDETSYTQACLILMDRGGKRQSIVC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10010762 [exp]	0	1
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023540 [exp]	1.7	0.9544
					Lus10000079 [exp]	9.8	0.8733
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10003296 [exp]	15.8	0.8884
					Lus10002009 [exp]	17.9	0.9077
AT1G20140		ASK4	SKP1-like 4 (.1)		Lus10002803 [exp]	19.7	0.8719
AT5G64820			unknown protein		Lus10025572 [exp]	21.9	0.9077
					Lus10033171 [exp]	25.3	0.9077
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	28.3	0.9077
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10017474 [exp]	31.0	0.9077
AT2G20825	ULT	ULT2	ULTRAPETALA 2, Developmental r...		Lus10038586 [exp]	33.5	0.9077

Compare expression of checked genes

Lus10010762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.