Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02170 215 / 1e-61 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT5G64240 202 / 5e-57 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2) AT4G25110 193 / 2e-53 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT1G22310 130 / 5e-32 ATMBD8, MBD8 methyl-CPG-binding domain 8 (.1.2) AT5G04200 82 / 3e-16 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1) AT1G79340 80 / 2e-15 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT1G79310 78 / 1e-14 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT1G16420 75 / 8e-14 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1) AT1G79320 74 / 1e-13 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT1G79330 73 / 5e-13 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035631 [exp] 1208 / 0 AT1G22310 139 / 4e-35 methyl-CPG-binding domain 8 (.1.2) Lus10035630 [exp] 493 / 2e-165 AT5G64240 214 / 1e-66 metacaspase 1a, metacaspase 3 (.1.2) Lus10010766 [exp] 247 / 3e-74 AT1G02170 293 / 1e-98 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10015843 [exp] 224 / 4e-64 AT1G02170 329 / 2e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10009321 [exp] 224 / 4e-64 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10028157 [exp] 210 / 5e-59 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035628 [exp] 202 / 5e-57 AT1G02170 270 / 4e-88 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10042857 [exp] 192 / 9e-54 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10012106 [exp] 89 / 1e-18 AT5G04200 392 / 2e-137 metacaspase 2f, metacaspase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G312900 [exp] 421 / 2e-131 AT1G22310 110 / 1e-25 methyl-CPG-binding domain 8 (.1.2) Potri.017G052600 [exp] 322 / 5e-100 AT1G02170 254 / 8e-82 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052900 [exp] 286 / 1e-86 AT1G02170 198 / 6e-60 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053000 [exp] 263 / 2e-78 AT1G02170 208 / 4e-64 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053100 [exp] 252 / 7e-74 AT1G02170 378 / 1e-129 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112200 [exp] 233 / 7e-68 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G113100 [exp] 228 / 3e-66 AT1G02170 471 / 3e-167 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112700 [exp] 221 / 1e-63 AT1G02170 460 / 9e-163 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.014G052500 [exp] 214 / 2e-61 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.005G164100 [exp] 211 / 4e-55 AT1G22310 100 / 6e-22 methyl-CPG-binding domain 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF00656 [flax] [poplar] Peptidase_C14 Caspase domain
Representative CDS sequence Show only first row Show all	>Lus10010764 pacid=23148763 polypeptide=Lus10010764 locus=Lus10010764.g ID=Lus10010764.BGIv1.0 annot-version=v1.0 ATGGATGCAAGAAGACATCCATTCGCGGCTGTGAAACGAGGATCGCCGCAGATATTGTCATCAGAGAGAAGAAAGGTCGACGACGAGATACTTTTAGTCG GTGGGAGAAGGAGAACGAGAGACAAAGTGAGCGAGCTGTCCAAAAGGATCTGCGGCCAGCTGCATCTCAAAAACGGCGGTGGGTCAGAAACGTTGGCGTA TGAGTCCCTTAACAGGAAGCCCTCCCCATTGGAGGAGGAAGAGAGCTCTTCTGATCGGCGTTACTTCGGCTTCCCAACAGATGATGTACTCGTCCTCACA GAAGAGGAGCAAGACCCGGAATTGACACCAACAAAGAAGAACATAAAACGAAGTATGGAATGGCTAGTGAAAGGATGCGAGTCAGGGGACTCGTTGGTTT TCTACTTCTCCGGTCACGGCGTCCGGCAACCGGACATGAACAACGACGAGCAAGATGGGTTCGACGAGACGATTTGCCCCTCCGATTTCATGGAAGCGGG ACTTATCTTCGACAACGATATCAATCAGACCATCGTCTGGCCGCTGAAGAAAGGAGTCACTTTTCACGCCATTGTTGATTCCTGCCACAGTGGAACCATC CTCGACCTCGCTTTTGTCTACCACCGCGATGGTGCCCGGAGGAGATCGTGGGAAGACAATCAGGCACCATCAGGTGCGCGGAAACACACGGAAGGCGGGT TAGCGATCTGTATCAGTGCTTGTCAAGACAACGAATTGGCAGTTGATACCTCGGCATTTGGGAAGGGGGTGATGAGTGGAGCAATGACGTATACCTTGGT GGAGGTTTTAAAGCAATTCCCAAATCCAACTTACGGTGAGTTGATGGAATTGATGCATCAGGCACTCATTGAGGTCAATAAGAGTGGGTGTTTCCTTTCC CTGATGTTCAGATCTATCTTCCATAACAAGATATTGCAGAAGCCATTGCTGTCTGCTTCCCAACCATTTGATGTCAGCAACAAGCACTTCACTCTCCTCT CATGTCGTTTGAACAGCCGAGGATCAGACTACGGCCACAACTTATCAGTCATACGGCGGCCACCGTTGAGTCTGCAACATAAATCATTTTTCGTCGGGCT TGACCCCCAACTTCATCAGTTTCCGCCTGTAGATGGTAAAATTCTCTCCATCTGCTTAAAATTTGCAGTCTCATCTCCTAACCCGCCGGCAGTCAGCCTC TGCCGCCGACTAGAAATGGCTGCTGTTGCTGCAACTACCAACCCTCACCCACCGTGTTTGGTCGAAACCCTAGATTTACTCCCTTCAATCGACATGGCCA GCCTCTCCCAATCCGAACTCCACGCACTTTCGCTCGGCTCTTCTTCTTCTTCGATCGCCGCCTCTCGTACCACCAAACCCGCTATTCCAGCCATCAACCG CTCTATCTTCAACGAGAGCGCCGGTTCCCGCAGGCAGACCTTCTCCCGTCCCTCCCCGCACCACCACCACCACCGTCACCGCCTCGCCGGAGTTCTCCCT AAAGCGTCCACCTCAGCTACTCCTCCGCCTGCTCCGGAATATACGCATGACCCGGCCAACGACCCTGACCGTCCGGAGAACCTCTCCATCATCCATTTCC TGAAGCAATTCCTCGCCGCTCACCCGGACTTCCAACAAGAGGAGTTTGATTTCTTCAGCCATTTCAACAACAGTTCCGTTCAACTCGTCCCCGTCGCTCC TTCGCCTCAAAAGAAGAGGAAGAGAGGAAGAAAGCCTGGCAAGATGAAACTGATGACGGTGAACACGGAGCAGCTGCAGCGGCCGGAAGAGAATAGATTT GCCGAGAAGTTGCAAGTTGTGAACAAGCATGGAGCTGTGGTGGATTTAGTGCAGCTGGCGAGCTTGGAGGATCCGTTCAGGGAAGAATTAAGGAGGAGGA CTGTGGGAATGTCGAAAGAAGATGAATTGTTAGGTTTTTTTAGGGATCTGGAAGGGGAGTGGTGCAGTAGGAGGAGGAAGAGGAAGTTTGTTGATGCTAG TGTTCTTGGTGATGCTTTGCCGGTTGGTTGGAAGCTTCTGCTTGCGCTTAAGAGGAAAGAAGGCCGTGCTTGGGTGTATTGCCGCAGATATGTCAGTCCT GGTGGACAACATTTCCTGTCATGCAAAGAAGTATCCGAGTATATGCAATCTGTTCTTGGAAGTCATAGTGCACCACAGGGAAAGGACTTGGCGAATGATG ATAATCAGTTGGACAACAGAGCGATTTCTGTCACGAATTATCATGTTAAAAGGGAGGTTGATGATGGGGGGCAGTCCGACAAACGCGGCAAAGAACTCCA GGTGCTTGGGATGGATAATCTGGCTGGAAAGACAACCAGGAGGTTCCGACTCGGGTCGTCTGTTGGAGATGGTGTGATAGTAAAAGACGGCAAGTACGAA TGCCAGTTCTGTCACAAAGTGTTTCACGAAAGACGCCGATACAACGGTCATGTTGGTGTTCACGTAAGGAATTACGTGAGAGGGGTCGAAGAATCACCTG TCGAAAGAATGGCACTGCAGAAGCAAACCGACAGTCCTGTGGAGGATGATGAGCTGTCTGCCGCCAAAATCTCTAAAATGGACGCTTTGATCGAAATTGC ACAGAGTTCTATTCTTGAAGCCTCCTCTTCTGTGCCGAACCATGAGGGACTTGGTTCTGATAAAGACAATGCAATTTCTGATCCTGTTCCTATTTCAGTT ATACACACTGACGCTGCAACTAATGAGAAAGCTCCTGAACTTGAGGTTCAAAAGGAGGGTGTTGGCATCATTGAAGAAGTGGAGAATGCTGCTGGAGGTA GTGAAGTTGCGAGGATAAATTCCTCATTGAGTGCTCAACTGCATCCTGTATCAGAAGTTCTTGAAGGAAAACGTAGTCTGGCATTTAACCATGAAGGGAA AGGTGAAGGCTTTACTACTGGTTCTTCAGTCAGACTGTTTGGAGCAGGATTCGCTGTGAATATGGCAGTTAGTTCTTCGGGTATTGAAGGTGTACCAGTT AATACAACTGAAGAACAAGCAGTACAGCAATTAGGGAAAGAGAATGCCGTTCCGCATGGAGCAGAGATCTTGATGTCAGGATTGGATAGTGATTTATCAA CAGAATCAACACCTTTTGCAATGCTTGATAAGGAAGAGAATCAATTTGATGCAGGAGGTGACGAACTGAGGGTAGAGGATATGGAACTAGTTGGTCTGGA AACTGAACAAGGAGAATCCCTCATGGCAACTCAAGGTGGTCCGATGCACAAAGTTATGGGAGCTGAGATGGAAAGCATGTGCGACGTTTCAGGGCCACTG GACTCAGGATTTGGATCAGGTACGGTTCAGGGATCAGAAGAGTTGTTCCCGACAATGTGTACTTGGTGCGGTGTGGAGTTTGGCTACGCATCTTCAGGTA GCAGTGCGCAGTCTGGATCAGCAGGCTATATGTGTCACAGCTGCAGGCTGAAAGTTTCGATGGAGGTTGATGGATGA
AA sequence Show only first row Show all	>Lus10010764 pacid=23148763 polypeptide=Lus10010764 locus=Lus10010764.g ID=Lus10010764.BGIv1.0 annot-version=v1.0 MDARRHPFAAVKRGSPQILSSERRKVDDEILLVGGRRRTRDKVSELSKRICGQLHLKNGGGSETLAYESLNRKPSPLEEEESSSDRRYFGFPTDDVLVLT EEEQDPELTPTKKNIKRSMEWLVKGCESGDSLVFYFSGHGVRQPDMNNDEQDGFDETICPSDFMEAGLIFDNDINQTIVWPLKKGVTFHAIVDSCHSGTI LDLAFVYHRDGARRRSWEDNQAPSGARKHTEGGLAICISACQDNELAVDTSAFGKGVMSGAMTYTLVEVLKQFPNPTYGELMELMHQALIEVNKSGCFLS LMFRSIFHNKILQKPLLSASQPFDVSNKHFTLLSCRLNSRGSDYGHNLSVIRRPPLSLQHKSFFVGLDPQLHQFPPVDGKILSICLKFAVSSPNPPAVSL CRRLEMAAVAATTNPHPPCLVETLDLLPSIDMASLSQSELHALSLGSSSSSIAASRTTKPAIPAINRSIFNESAGSRRQTFSRPSPHHHHHRHRLAGVLP KASTSATPPPAPEYTHDPANDPDRPENLSIIHFLKQFLAAHPDFQQEEFDFFSHFNNSSVQLVPVAPSPQKKRKRGRKPGKMKLMTVNTEQLQRPEENRF AEKLQVVNKHGAVVDLVQLASLEDPFREELRRRTVGMSKEDELLGFFRDLEGEWCSRRRKRKFVDASVLGDALPVGWKLLLALKRKEGRAWVYCRRYVSP GGQHFLSCKEVSEYMQSVLGSHSAPQGKDLANDDNQLDNRAISVTNYHVKREVDDGGQSDKRGKELQVLGMDNLAGKTTRRFRLGSSVGDGVIVKDGKYE CQFCHKVFHERRRYNGHVGVHVRNYVRGVEESPVERMALQKQTDSPVEDDELSAAKISKMDALIEIAQSSILEASSSVPNHEGLGSDKDNAISDPVPISV IHTDAATNEKAPELEVQKEGVGIIEEVENAAGGSEVARINSSLSAQLHPVSEVLEGKRSLAFNHEGKGEGFTTGSSVRLFGAGFAVNMAVSSSGIEGVPV NTTEEQAVQQLGKENAVPHGAEILMSGLDSDLSTESTPFAMLDKEENQFDAGGDELRVEDMELVGLETEQGESLMATQGGPMHKVMGAEMESMCDVSGPL DSGFGSGTVQGSEELFPTMCTWCGVEFGYASSGSSAQSGSAGYMCHSCRLKVSMEVDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010764 [exp]	0	1
AT2G37480			unknown protein		Lus10003982 [exp]	1.0	0.9224
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10001237 [exp]	9.5	0.9011
AT5G06240		EMB2735	embryo defective 2735 (.1)		Lus10017003 [exp]	10.9	0.8543
AT2G17350			unknown protein		Lus10026564 [exp]	15.4	0.8776
					Lus10023403 [exp]	15.5	0.8920
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10027242 [exp]	15.9	0.9124
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10042126 [exp]	16.7	0.8771
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Lus10037414 [exp]	18.2	0.8782
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039548 [exp]	21.0	0.8751
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10000446 [exp]	21.0	0.8889

Compare expression of checked genes

Lus10010764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.