Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02170 293 / 1e-98 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT5G64240 271 / 4e-90 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2) AT4G25110 256 / 8e-84 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT1G79340 79 / 2e-16 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT1G79320 72 / 2e-14 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT1G79330 72 / 3e-14 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1) AT1G79310 70 / 1e-13 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT5G04200 67 / 7e-13 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1) AT1G16420 59 / 1e-09 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009321 [exp] 360 / 1e-124 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10015843 [exp] 360 / 2e-124 AT1G02170 329 / 2e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10028157 [exp] 280 / 2e-92 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10042857 [exp] 263 / 3e-87 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10010764 [exp] 246 / 9e-75 AT1G02170 216 / 5e-62 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035630 [exp] 215 / 2e-68 AT5G64240 214 / 1e-66 metacaspase 1a, metacaspase 3 (.1.2) Lus10012106 [exp] 67 / 8e-13 AT5G04200 392 / 2e-137 metacaspase 2f, metacaspase 9 (.1) Lus10001761 [exp] 64 / 1e-11 AT1G79340 560 / 0.0 metacaspase 2d, metacaspase 4 (.1) Lus10001835 [exp] 64 / 2e-11 AT1G79340 554 / 0.0 metacaspase 2d, metacaspase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053100 [exp] 389 / 1e-135 AT1G02170 378 / 1e-129 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G113100 [exp] 296 / 4e-100 AT1G02170 471 / 3e-167 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.014G052500 [exp] 293 / 8e-99 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112700 [exp] 291 / 4e-98 AT1G02170 460 / 9e-163 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112200 [exp] 290 / 2e-97 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052600 [exp] 235 / 4e-76 AT1G02170 254 / 8e-82 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053000 [exp] 233 / 2e-75 AT1G02170 208 / 4e-64 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052900 [exp] 211 / 2e-66 AT1G02170 198 / 6e-60 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.006G026500 [exp] 69 / 1e-13 AT5G04200 426 / 4e-151 metacaspase 2f, metacaspase 9 (.1) Potri.016G024500 [exp] 68 / 4e-13 AT5G04200 425 / 1e-150 metacaspase 2f, metacaspase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF00656 [flax] [poplar] Peptidase_C14 Caspase domain
Representative CDS sequence Show only first row Show all	>Lus10010766 pacid=23148727 polypeptide=Lus10010766 locus=Lus10010766.g ID=Lus10010766.BGIv1.0 annot-version=v1.0 ATGAGGTATTTCCTCATCCACAAGTTTGGGTACCCTGCCGAATCCATCTTGACCCTCACAGAAGAAGAAGTCAACCCGAGGAGAATACCAACAAAGGAGA ACATAAGAAGAGGGATGAAGTGGCTGGTGGAAGGGTGCAAATCAGGGGACTCTCTGATGTTCTATTTCTCAGGCCACGGTACCCAGCAGCGTGACTACGA CATGGACGAGCTGGACGGGTTCGATGAGACGTTGTGCCCTTTGGACTTCGAGATGGAAGGAATGATCATCGACGACGAGATCAATTCGACCATCGTCGCC CCACTTCCACCGGGGACTGTTCTTCACGCTATCGTTGATTCGTGCCACAGTGGTACAGTTCTTGATCTGCCGTTCGTCTGCCGAGTCAACAGGGAAGGGC AGTACGCTTGGGAGGATCATCGACGGTCGGATTACAGTGGTAAGAAAGATACGTGTGGTGGGCTGGCTATTTGCATCAGTGCTTGTAACGATCATCAAAC CAGTGCCGATACCAATGTAATGGCGGGAAATGTGTCGACGGGGGCATTAACGTACAGCTTAATCCAAGCGGTGCAAAACGAGCCAGGAATCAGCTACGGG CGGTTGTTGAATGCAATGCGGGTAGCAATCCGAGCAGCCAGGTCCCAGGGTTTGCGCCTCAGCGGCCCCGTTGCTTCCCTCGTCAACGTAGCTCTTTTTA GCACCCAGTCCACTCAGGAGCCTCAATTGTCTTGTTCCCAGCAATTTGATGTTTTTTCCAGGAAATTTGCTCTCTAA
AA sequence Show only first row Show all	>Lus10010766 pacid=23148727 polypeptide=Lus10010766 locus=Lus10010766.g ID=Lus10010766.BGIv1.0 annot-version=v1.0 MRYFLIHKFGYPAESILTLTEEEVNPRRIPTKENIRRGMKWLVEGCKSGDSLMFYFSGHGTQQRDYDMDELDGFDETLCPLDFEMEGMIIDDEINSTIVA PLPPGTVLHAIVDSCHSGTVLDLPFVCRVNREGQYAWEDHRRSDYSGKKDTCGGLAICISACNDHQTSADTNVMAGNVSTGALTYSLIQAVQNEPGISYG RLLNAMRVAIRAARSQGLRLSGPVASLVNVALFSTQSTQEPQLSCSQQFDVFSRKFAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	0	1
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	1.0	0.9684
					Lus10018997 [exp]	2.4	0.9681
					Lus10033847 [exp]	3.0	0.9670
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031838 [exp]	4.2	0.9095
AT1G05510			Protein of unknown function (D...		Lus10022586 [exp]	4.5	0.9071
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Lus10021836 [exp]	4.7	0.9224
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10013552 [exp]	5.7	0.9529
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10031455 [exp]	6.0	0.9346
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	7.0	0.9306
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10009321 [exp]	8.1	0.9393

Compare expression of checked genes

Lus10010766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.