Plant FIBer expression Database

Lus10010767 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30810 207 / 1e-64 SCPL29 serine carboxypeptidase-like 29 (.1)
AT3G07990 167 / 2e-49 SCPL27 serine carboxypeptidase-like 27 (.1)
AT2G35780 160 / 8e-47 SCPL26 serine carboxypeptidase-like 26 (.1)
AT2G24010 152 / 1e-43 SCPL23 serine carboxypeptidase-like 23 (.1)
AT3G02110 152 / 2e-43 SCPL25 serine carboxypeptidase-like 25 (.1)
AT2G24000 148 / 2e-42 SCPL22 serine carboxypeptidase-like 22 (.1.2)
AT4G30610 145 / 8e-41 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
AT5G23210 117 / 6e-31 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4)
AT3G63470 116 / 5e-30 SCPL40 serine carboxypeptidase-like 40 (.1)
AT4G15100 114 / 1e-29 SCPL30 serine carboxypeptidase-like 30 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040387
[exp]
174 / 4e-52 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1)
Lus10023505
[exp]
173 / 2e-51 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1)
Lus10022184
[exp]
160 / 3e-48 AT3G07990 228 / 6e-72 serine carboxypeptidase-like 27 (.1)
Lus10015382
[exp]
155 / 2e-44 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1)
Lus10041412
[exp]
145 / 2e-40 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1)
Lus10019954
[exp]
136 / 2e-37 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
Lus10015489
[exp]
135 / 6e-37 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
Lus10011213
[exp]
124 / 7e-33 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2)
Lus10037810
[exp]
118 / 1e-30 AT3G17180 565 / 0.0 serine carboxypeptidase-like 33 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G103100
[exp]
254 / 1e-82 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1)
Potri.010G220100
[exp]
176 / 2e-52 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1)
Potri.008G041800
[exp]
173 / 1e-51 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1)
Potri.004G120100
[exp]
161 / 4e-47 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1)
Potri.017G094100
[exp]
159 / 4e-46 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1)
Potri.018G105700
[exp]
152 / 9e-44 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
Potri.006G183200
[exp]
152 / 2e-43 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
Potri.008G041700
[exp]
145 / 4e-41 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1)
Potri.010G220200
[exp]
141 / 2e-39 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1)
Potri.011G046600
[exp]
126 / 7e-34 AT1G11080 674 / 0.0 serine carboxypeptidase-like 31 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF00450 Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence
>Lus10010767 pacid=23147701 polypeptide=Lus10010767 locus=Lus10010767.g ID=Lus10010767.BGIv1.0 annot-version=v1.0
ATGGACGATTATCACGACTATCTGTTCCAATTCTTATGGTCAGCTGGAATGATCTCTGATCAGACGTATAAGCAAGCTAATAACGCCTGCGATCACCTTC
TTGATATTATAGACCAAAAAGTTGGACACATTGATCCATACAGTGCATTCACTCCTACCAGCATTCCTAATGTCAGCCAATCCATCCAGGAGAAGTATGA
TCCTTGCACAGAGAAGCACTCTACTATTTATTTCAGCTTGCCCGAGGTTCAACAGGCACTCCATGTTTCTAGACAAGTTGCATCAATTAAATGGGCTACT
TGCAGTGGTGACACAGATATAGTGATCCCAGTGACATCAACTCGATACTCCATTGCTGCACTTAAACTTGAAACCGTGAAGCCTTGGCGTGCTTGGTATG
ATGATGGACATGTTGGAGGATGGACTCAAGAATACAATGGGCTGACCTTTGTTGCTGTCCGTGGAGCCGGACATGAAGTTCCTCTCCACAAACCCAAACT
GGCTCTCACATTGGCTAAGTCCTTCTTAGCTGGCTCATCCATGCCCGATCTCCAACGTTGCTTTGTGATTCTTAAACAAGGGCTGGAGATTTTCTCTGCC
AGTTTAACTTTAATCGTTCGTTGCACTCCATTCCTCAATGTATGTCAGTACGGATTAGACACAAGGAAATCCACAGATGCATAA
AA sequence
>Lus10010767 pacid=23147701 polypeptide=Lus10010767 locus=Lus10010767.g ID=Lus10010767.BGIv1.0 annot-version=v1.0
MDDYHDYLFQFLWSAGMISDQTYKQANNACDHLLDIIDQKVGHIDPYSAFTPTSIPNVSQSIQEKYDPCTEKHSTIYFSLPEVQQALHVSRQVASIKWAT
CSGDTDIVIPVTSTRYSIAALKLETVKPWRAWYDDGHVGGWTQEYNGLTFVAVRGAGHEVPLHKPKLALTLAKSFLAGSSMPDLQRCFVILKQGLEIFSA
SLTLIVRCTPFLNVCQYGLDTRKSTDA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G30810 SCPL29 serine carboxypeptidase-like 2... Lus10010767
[exp]
0 1

Lus10010767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.