Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20630 258 / 7e-88 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G72610 245 / 7e-83 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT1G09560 146 / 7e-44 GLP5 germin-like protein 5 (.1) AT1G02335 142 / 3e-42 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT3G04200 140 / 1e-41 RmlC-like cupins superfamily protein (.1) AT5G26700 140 / 1e-41 RmlC-like cupins superfamily protein (.1) AT5G39190 137 / 2e-40 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39160 137 / 2e-40 RmlC-like cupins superfamily protein (.1.2.3) AT5G39110 137 / 2e-40 RmlC-like cupins superfamily protein (.1) AT5G39130 137 / 3e-40 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022020 [exp] 369 / 1e-131 AT5G20630 282 / 2e-97 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10002795 [exp] 233 / 7e-78 AT1G72610 261 / 3e-89 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10037664 [exp] 197 / 1e-63 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037663 [exp] 196 / 2e-63 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015644 [exp] 191 / 3e-61 AT5G20630 192 / 6e-62 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020026 [exp] 189 / 1e-60 AT5G20630 190 / 3e-61 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10036296 [exp] 185 / 5e-59 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 184 / 1e-58 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020851 [exp] 182 / 1e-57 AT5G20630 181 / 2e-57 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142600 [exp] 270 / 2e-92 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.003G065266 [exp] 252 / 1e-85 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.001G169000 [exp] 251 / 2e-85 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.002G184900 [exp] 147 / 5e-44 AT3G62020 332 / 3e-117 germin-like protein 10 (.1.2) Potri.011G162200 [exp] 146 / 7e-44 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.011G163800 [exp] 145 / 3e-43 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.014G110400 [exp] 144 / 4e-43 AT3G62020 328 / 2e-115 germin-like protein 10 (.1.2) Potri.011G163216 [exp] 144 / 7e-43 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 144 / 7e-43 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.013G051700 [exp] 142 / 4e-42 AT3G05950 298 / 2e-103 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10010769 pacid=23147695 polypeptide=Lus10010769 locus=Lus10010769.g ID=Lus10010769.BGIv1.0 annot-version=v1.0 ATGATGTACACCAACCTCCCAACCCTGCTCCTCATCCTTTTCCTCGTCATCTCTTGTTATTCCTCCACAGTAGCAGCCTTAGTGCAAGACTTCTGCGTGG CAGACTTGAAGTCAGCAGACACACCTTCGGGATACCCATGCAAGCCAGCCACCTCCGTCACCGAAATCGACTTTGTATTCTCGGGGCTAGCATCCCCAGG GAACACAACCAACCTCATCAAAGCAGCAGTGACCCCAGGTTTCGTCTCCCAGTTCCCTGGGGTCAACGGCCTTGGACTCTCCATAGCAAGGCTTGACCTT GCTGTGGATGGAGTAATCCCGCTCCACACCCACCCTGCTGCTTCTGAGGTTCTTCTCGTGTTGCAAGGCACCATCTGCGCGGGCTTCATATCCTCGGGTG CTAACAAGGTATACTTCAAGTCCCTTCAGAAGGGCGACGCTATGGTGTTCCCTCAAGGACTCCTCCATTTCCAGTTCAACTCTGGTAAGACACCAGCTGC TGCATTCGTCAGCTTGAGCAGCCCTAACCCTGGCCTCCAGATTACCGACTTTGCTCTCTTTGCTAATGACTTGCCCTCTGAGATTGTCGAGAAAGTTACT TTCTTGGATGATGCCCAGGTCAAGAAGCTTAAGGGTGTTCTTGGTGGCACCGGCTAA
AA sequence Show only first row Show all	>Lus10010769 pacid=23147695 polypeptide=Lus10010769 locus=Lus10010769.g ID=Lus10010769.BGIv1.0 annot-version=v1.0 MMYTNLPTLLLILFLVISCYSSTVAALVQDFCVADLKSADTPSGYPCKPATSVTEIDFVFSGLASPGNTTNLIKAAVTPGFVSQFPGVNGLGLSIARLDL AVDGVIPLHTHPAASEVLLVLQGTICAGFISSGANKVYFKSLQKGDAMVFPQGLLHFQFNSGKTPAAAFVSLSSPNPGLQITDFALFANDLPSEIVEKVT FLDDAQVKKLKGVLGGTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10010769 [exp]	0	1
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10022020 [exp]	1.7	0.9500
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	2.8	0.9346
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	3.5	0.9386
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Lus10030917 [exp]	3.9	0.9349
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	9.7	0.9209
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10029100 [exp]	11.0	0.8947
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10010273 [exp]	12.4	0.8582
AT3G08770		LTP6	lipid transfer protein 6 (.1.2...		Lus10025230 [exp]	14.8	0.8929
					Lus10009852 [exp]	15.3	0.8052
AT1G69935		SHW1	short hypocotyl in white light...		Lus10013285 [exp]	15.9	0.8927

Compare expression of checked genes

Lus10010769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.