Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24120 463 / 8e-157 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) AT5G15700 411 / 2e-136 DNA/RNA polymerases superfamily protein (.1.2) AT1G68990 407 / 3e-135 MGP3 male gametophyte defective 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022181 [exp] 578 / 0 AT2G24120 1300 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10031952 [exp] 421 / 1e-140 AT5G15700 1274 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10035150 [exp] 420 / 2e-140 AT5G15700 1273 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10034355 [exp] 416 / 2e-138 AT2G24120 1276 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10005097 [exp] 412 / 5e-137 AT5G15700 1289 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10019208 [exp] 402 / 5e-135 AT1G68990 1245 / 0.0 male gametophyte defective 3 (.1.2) Lus10036844 [exp] 377 / 3e-123 AT1G68990 1244 / 0.0 male gametophyte defective 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103300 [exp] 480 / 2e-163 AT2G24120 1381 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.006G181100 [exp] 479 / 6e-163 AT2G24120 1359 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.008G112800 [exp] 424 / 7e-142 AT1G68990 1269 / 0.0 male gametophyte defective 3 (.1.2) Potri.017G105801 [exp] 420 / 4e-140 AT5G15700 1331 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.010G136700 [exp] 417 / 3e-139 AT1G68990 1248 / 0.0 male gametophyte defective 3 (.1.2) Potri.004G111600 [exp] 413 / 4e-137 AT5G15700 1326 / 0.0 DNA/RNA polymerases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00940 [flax] [poplar] RNA_pol DNA-dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Lus10010770 pacid=23147703 polypeptide=Lus10010770 locus=Lus10010770.g ID=Lus10010770.BGIv1.0 annot-version=v1.0 ATGAAATTACTTGTTCTCCGGTCAATTGTTAGTCTTCTCATTTCCCTCCTTTTTCTCCAGCCGGAAGCAGCAGCAGTTAATTTGGTTAGTGGAGAGAAAC CGGCTGATGTTTATTCCGAGATTGCTTTGAGAGTACTTGAAATAATGAAAAGAGACAGCAGTAAAGACCCTGCTTCCTTTCCAAATGCCTTATTAGCTAA GGCTTTAGTGAGTCAGGTAGACAGGAAATTAGTTAAACAAACAGTGATGACTTCTGTCTATGGTGTTACTTTTATCGGGGCACGTGAACAAATAAAAAGA AGATTAGAGGAGAAGGGCGTGTTTACAGATGATAGACTTCTGTTTAGAGCATCTTGTTATACTGCTAAGGTCACACTTGCTGCCCTAGGCGAATTATTCC AAGCTGCACGTAAAATCATGGGTTGGCTTGGTGATTGTGCAAAGGTCATTGCTTCAGATGGCCAACCTGTGCGGTGGACGACTCCTCTAGGTCTTCCCAT CGTTCAACCATACTTCAAAAACAAAAGACAAGTTATACATACTTCTCTCCAAGTTTTGGCCCTGCAGCATCAGGGAAGCTCAGTGCAGGGTAGGAAACAG AGAACTGCATTTCCACCAAATTTTGTGCACTCGCTCGATGGGTCACACATGATGCTGACAGCTCTGGCCTGTAGAGATGCCAATTTACGCTTTGCAGGAG TACATGATTCATTCTGGACGCATGCCTGTGATGTGGATTTGTTGAACCGGCTGCTACGTGAAAAGTTCGTGGAGCTCTATACTATGCCAATACTTGAAAA TTTAGAGGAAAGCTTCCACACAACATATCCAGGACTGGAGTTCCCTCCTCTCCCCGAGAGAGGGACCTTTGACTTGAACGAAGTTATCAAATCAGAGTAT TTCTTCAATTGA
AA sequence Show only first row Show all	>Lus10010770 pacid=23147703 polypeptide=Lus10010770 locus=Lus10010770.g ID=Lus10010770.BGIv1.0 annot-version=v1.0 MKLLVLRSIVSLLISLLFLQPEAAAVNLVSGEKPADVYSEIALRVLEIMKRDSSKDPASFPNALLAKALVSQVDRKLVKQTVMTSVYGVTFIGAREQIKR RLEEKGVFTDDRLLFRASCYTAKVTLAALGELFQAARKIMGWLGDCAKVIASDGQPVRWTTPLGLPIVQPYFKNKRQVIHTSLQVLALQHQGSSVQGRKQ RTAFPPNFVHSLDGSHMMLTALACRDANLRFAGVHDSFWTHACDVDLLNRLLREKFVELYTMPILENLEESFHTTYPGLEFPPLPERGTFDLNEVIKSEY FFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010770 [exp]	0	1
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10035926 [exp]	3.0	0.8465
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10003839 [exp]	6.9	0.7992
AT1G74070			Cyclophilin-like peptidyl-prol...		Lus10009619 [exp]	19.5	0.8287
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10004200 [exp]	22.8	0.8330
AT5G20140			SOUL heme-binding family prote...		Lus10001847 [exp]	22.8	0.8173
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017149 [exp]	25.3	0.8137
AT5G36230			ARM repeat superfamily protein...		Lus10018182 [exp]	27.0	0.7708
AT5G52030			TraB family protein (.1.2)		Lus10038884 [exp]	32.2	0.8217
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	32.2	0.7879
					Lus10007688 [exp]	33.9	0.7205

Compare expression of checked genes

Lus10010770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.