Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24130 842 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G20480 362 / 1e-109 EFR EF-TU receptor (.1) AT3G47570 346 / 3e-104 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 339 / 2e-101 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 323 / 1e-95 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 320 / 2e-93 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G47580 311 / 2e-91 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 301 / 4e-87 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G28440 293 / 6e-85 HSL1 HAESA-like 1 (.1) AT1G17230 294 / 8e-85 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022180 [exp] 430 / 2e-142 AT2G24130 289 / 2e-88 Leucine-rich receptor-like protein kinase family protein (.1) Lus10004388 [exp] 377 / 1e-112 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 362 / 8e-110 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026938 [exp] 358 / 8e-109 AT5G20480 735 / 0.0 EF-TU receptor (.1) Lus10030847 [exp] 357 / 3e-108 AT3G47570 746 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 361 / 1e-107 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 355 / 2e-107 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 355 / 2e-107 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004827 [exp] 357 / 7e-107 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G181200 [exp] 1001 / 0 AT2G24130 1186 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G103400 [exp] 954 / 0 AT2G24130 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G042500 [exp] 556 / 0 AT2G24130 703 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G184100 [exp] 543 / 4e-179 AT2G24130 710 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G030800 [exp] 395 / 2e-122 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G020900 [exp] 395 / 4e-122 AT3G47570 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G037400 [exp] 387 / 5e-119 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 379 / 2e-116 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 375 / 1e-114 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 375 / 1e-114 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10010772 pacid=23147706 polypeptide=Lus10010772 locus=Lus10010772.g ID=Lus10010772.BGIv1.0 annot-version=v1.0 ATGAATGTTGCAGTAACCACCAAGCTGCAGAGTTGGATCCCCCTGTCCCACAAAAACAAGAACATCAACATGTTTATCAACTTCCTCTTCTTTTCAATAA TCCTTAATATGATATTCCTCCCAGTCTACTCCGGTGAGGAAAAACAGAGAGCTGCCCTGCTTCACTTCAAATCCGTCATCGTATCAGACCCAGAAGGCTT TCTCCACAACTGGAGATCCTCTTCCCCACTTCACGTCTGCAACTGGACAGGAGTGGAGTGCAGCAACAACAACAATATTGCCCAAATTGTGCAGATTGAC CTCAGCGGGATGTCACTTCACGGCACCATATCTCCGTCCCTCTCCAACATTTCTTCGCTTCTCGTTCTTGACTTGTCCAATAACTTCTTCAGAGGCCGTT TCCCATGTGAACTAGGTCAGATTTCCCAACTGAGGCAGCTCAGTCTCTCCTGGAATCTGCTGGAAGGTGGAATTCCATTGGAATTAGGGTTTCTGAGGAA GTTGGTTTACATCGATTTGGGCAGCAATAAGCTGATGGACGAAATACCTGAACCACTTTTCTGTAATGGGTCCTCAAAATTGGAATATGTTGACTTTTCC AACAACTCCTTGTCAGGAGAAATCCCTATCAATTGTGGTGAACTTATTCGATTGAGGTTTCTTCTCCTTTGGTCTAATAAGCTGGTCGGTAGTGTTCCTC CATTACTGGCCAAATCTGCAGAACTGGAATGGCTAGATTTGGAATCCAACATGCTGACTGGTGAATTGCCTACAGGGATTGTGAGTAAGATGCCCAAATT ACAGTTCCTTTACTTGTCTTACAACCGTTTTGTGAGTAGAGATCTTGAGCCGTTTTTGTCAGCTTTAGTTAGGGTTTGTTCTAATCTTGAAGAGCTTGAG TTAGCTGGGAATAATCTTAGTGGGAAGATACCTCCTATTATTGGCAATCTTTCCAATAACCTTGTACAGATTCATTTAGACCAGAACCTATTAACAGGTT TTATACCTCCTCAGATTTCAAACCTTGTCAACCTCACCCTTTTAAACCTTTCTACTAACCTTCTCAACGGTACCATCCCGATCCAACTATGTTCGATGGT GAAGCTAGAGAGGATCTCTCTCTCGAATAATTCCATCTCGGGGGGAATCCCAGCGTGTTTTGGTTCGCTTCCTCATCTGGGTCTCCTTGACTTGTCCAAG AACAAGTTTTCTGGATCAATTCCTGACAGCTTTGCCAACCTTCCCCAGTTGAGAAAGTTGTTGCTTTTTGAAAATCAGCTTTCTGGAACTATCCCAAGAA GCCTGGGAGAGTGCATGAACCTGGAGATTCTGGATTTGTCACGGAATGAGATTTCAGGGATGATTCCCGGTGAAGTCGCTGGTTTAAGGAGCTTGAAGTT GTACTTGAATTTGTCTAGTAATCATTTGGATGGGGAATTGCCTTTGGAGCTTAGTAAGATGGATATGGTCCTAGCAATTGATCTATCATCAAACCATCTT TCTAGCACAATCCCAATCCAACTTGGAAGCTGCATTGCTTTAGAATACCTCAACCTTTCAGGTAATTCCTTTCGAGGCCCTCTTCCTGATTCAATAGGGA AGCTGCCTTATCTCAAAGCACTAGATGTGTCTTTAAACCGGCTGAGTGGTTCAATACCACAAACACTGCAGACATCTCCAACTCTCAAGAAACTCAACTT CTCTTTCAATATTTTCTCTGGGAACATTTCGAACAAAGGCGCATTTTCAACACTGACGATGCAATCCTTCTTGGGTAACCATGGTCTTTGTGGCACAATA CAAGGAATGAATAGCTGCAAGAAGAGACATTCCCGTAAAGCTTTCGTTTCGACTCTCATCGTGTCATTATTTGCTCTTCTTTCCCTTTGTATATTTGCCT ATCGCTCAATTTCCAAGTTTAGTCCCAGAAGTAAGTTTGGGATATTTGATCAAGAAGAGTTGGATGATGATGAGGAGAAAGGGAACAAAAATGACCTAAA GTATCCAAGAATATCCTACAGGCAACTCATTGAAGCTACTGGTGGGCTCTGTCCTTCAAACCTGATAGGGTCAGGCAGGTTTGGGAAGGTCTATAAGGGA GTTCTTCATGACAATACAAGGATAGCTGTAAAAGTAGTGGTGGATACAAAGAGTGGAGCAGGAGACATGATCATCAATGGAAGTTTCAAGAGGGAAAGCC AGGTTCTGCGGAGAATAAGGCACAGAAATCTGATCAGGATCATTACAACTTGCAACAGACCAAATTTTAAGGCTCTTGTTTTCCCTCTCATGTCAAATGG AAGCCTGGAGATGCATTTGTATCCAAGCCATGGATTAAAGCCTTGTCTGAATTTTGTTCAGTTGATAAGCATTTGCCATGATGTAGCTGAAGCTTTAGCC TATCTGCATCATCATTCTCCTGTCAGAGTTGTGCACTGTGATCTCAAGCCTAGCAACATTCTTCTGGATGATGACCTCAATGCTTTGGTTACTGATTTTG GGATAGCCAAGTTGGTTAATGGTGCTGATGATCTCAAAGATGATTCAGTTTCCTTTGAATCAACAGATGGCTTGTTGTGTGGATCCTTTGGCTACATAGC TCCTGCAAATGAAATGGGTAAGCTAAAGGATTATGTCACCACTCCTCCCTCGCTACTAATTCTAGGGACACATTACAAGTAG
AA sequence Show only first row Show all	>Lus10010772 pacid=23147706 polypeptide=Lus10010772 locus=Lus10010772.g ID=Lus10010772.BGIv1.0 annot-version=v1.0 MNVAVTTKLQSWIPLSHKNKNINMFINFLFFSIILNMIFLPVYSGEEKQRAALLHFKSVIVSDPEGFLHNWRSSSPLHVCNWTGVECSNNNNIAQIVQID LSGMSLHGTISPSLSNISSLLVLDLSNNFFRGRFPCELGQISQLRQLSLSWNLLEGGIPLELGFLRKLVYIDLGSNKLMDEIPEPLFCNGSSKLEYVDFS NNSLSGEIPINCGELIRLRFLLLWSNKLVGSVPPLLAKSAELEWLDLESNMLTGELPTGIVSKMPKLQFLYLSYNRFVSRDLEPFLSALVRVCSNLEELE LAGNNLSGKIPPIIGNLSNNLVQIHLDQNLLTGFIPPQISNLVNLTLLNLSTNLLNGTIPIQLCSMVKLERISLSNNSISGGIPACFGSLPHLGLLDLSK NKFSGSIPDSFANLPQLRKLLLFENQLSGTIPRSLGECMNLEILDLSRNEISGMIPGEVAGLRSLKLYLNLSSNHLDGELPLELSKMDMVLAIDLSSNHL SSTIPIQLGSCIALEYLNLSGNSFRGPLPDSIGKLPYLKALDVSLNRLSGSIPQTLQTSPTLKKLNFSFNIFSGNISNKGAFSTLTMQSFLGNHGLCGTI QGMNSCKKRHSRKAFVSTLIVSLFALLSLCIFAYRSISKFSPRSKFGIFDQEELDDDEEKGNKNDLKYPRISYRQLIEATGGLCPSNLIGSGRFGKVYKG VLHDNTRIAVKVVVDTKSGAGDMIINGSFKRESQVLRRIRHRNLIRIITTCNRPNFKALVFPLMSNGSLEMHLYPSHGLKPCLNFVQLISICHDVAEALA YLHHHSPVRVVHCDLKPSNILLDDDLNALVTDFGIAKLVNGADDLKDDSVSFESTDGLLCGSFGYIAPANEMGKLKDYVTTPPSLLILGTHYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24130			Leucine-rich receptor-like pro...		Lus10010772 [exp]	0	1
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Lus10014453 [exp]	1.0	0.9195
AT3G19200			unknown protein		Lus10014046 [exp]	2.0	0.9138
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Lus10028678 [exp]	9.6	0.8968
AT3G06880			Transducin/WD40 repeat-like su...		Lus10017257 [exp]	12.1	0.9066
AT2G27550		ATC	centroradialis (.1)		Lus10019541 [exp]	14.8	0.8549
AT3G20015			Eukaryotic aspartyl protease f...		Lus10010157 [exp]	26.9	0.8791
					Lus10025421 [exp]	36.2	0.8878
AT1G13590		ATPSK1	phytosulfokine 1 precursor (.1...		Lus10030916 [exp]	45.4	0.8527
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10028271 [exp]	47.0	0.8839
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Lus10007526 [exp]	48.2	0.8653

Compare expression of checked genes

Lus10010772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.