Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57830 142 / 3e-38 Protein of unknown function, DUF593 (.1) AT4G30830 126 / 1e-32 Protein of unknown function, DUF593 (.1) AT3G54740 93 / 2e-20 Protein of unknown function, DUF593 (.1.2) AT5G06560 89 / 5e-19 Protein of unknown function, DUF593 (.1) AT2G24140 86 / 7e-19 Protein of unknown function, DUF593 (.1) AT1G70750 66 / 2e-11 Protein of unknown function, DUF593 (.1) AT5G16720 66 / 2e-11 Protein of unknown function, DUF593 (.1) AT3G11850 64 / 6e-11 Protein of unknown function, DUF593 (.1.2) AT2G30690 61 / 9e-10 Protein of unknown function, DUF593 (.1) AT1G18990 58 / 6e-09 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022171 [exp] 705 / 0 AT5G57830 141 / 3e-38 Protein of unknown function, DUF593 (.1) Lus10036599 [exp] 309 / 2e-102 AT4G30830 179 / 2e-52 Protein of unknown function, DUF593 (.1) Lus10035817 [exp] 306 / 2e-101 AT4G30830 175 / 4e-51 Protein of unknown function, DUF593 (.1) Lus10015990 [exp] 96 / 4e-21 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10012288 [exp] 95 / 5e-21 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1) Lus10029342 [exp] 91 / 2e-19 AT5G06560 473 / 4e-163 Protein of unknown function, DUF593 (.1) Lus10016203 [exp] 87 / 3e-18 AT5G06560 475 / 2e-164 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 73 / 2e-13 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10018782 [exp] 64 / 1e-10 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103500 [exp] 231 / 2e-71 AT5G57830 169 / 5e-48 Protein of unknown function, DUF593 (.1) Potri.006G181300 [exp] 229 / 2e-70 AT5G57830 162 / 3e-45 Protein of unknown function, DUF593 (.1) Potri.016G065200 [exp] 89 / 8e-19 AT5G06560 517 / 4e-180 Protein of unknown function, DUF593 (.1) Potri.006G199000 [exp] 85 / 1e-17 AT5G06560 523 / 0.0 Protein of unknown function, DUF593 (.1) Potri.015G068400 [exp] 68 / 3e-12 AT1G74830 340 / 1e-111 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 66 / 2e-11 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 64 / 8e-11 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.002G242900 [exp] 62 / 3e-10 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) Potri.019G012200 [exp] 62 / 4e-10 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.005G220600 [exp] 62 / 5e-10 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10010774 pacid=23147696 polypeptide=Lus10010774 locus=Lus10010774.g ID=Lus10010774.BGIv1.0 annot-version=v1.0 ATGGGGGAAAGACATCATGCACTGATGCTTCCTGAAACGGATGCCATTACTCTGAAAGAAGCCCTCCAAGTACAGCAAGATATCCTTCAGAAGCTTTATA GGGAATTGGATGACGAAAGGGAAGCAGCAGCAAGCGCAGCGAGCGAGGCAATGTCAATGATCCTGCGTTTACAAGGAGAGAAAGCTGCACTGAAGATGGA AGCCAATCAGTACAAGAGGATGGCCGAAGAGAAGATGACTCACGCTGAGGAGACATTGGATCTTTGCGACGATTTGATGTATCAGAAGGAGATGGAGATT GCTTCCCTCGAATTCCAGCTCCAGTCTTACAGGAACAGGCTTGTCGGAATGGGACTCAACGATGTCGAGGTTCCCGAACACGATCAGCAGCAGTTGCCTC ATCACACTAATGTTAGGAGGCTTAACTCCCTGCCCCAGCTCACCATGGTGGATTTCGGCCATAAGAAAATCGGTGGATTTGAGAGGAAACTACACCCCCA GGTGGATCTTGCAACAGCAAGTAGTACTATAGATGAGGAAGCTGAATTCCAAGAGATTCATGAGTTGGAGAAGAAGCTAGTGGCTCCTGCTACACATGGA GACATCAACTCTTGCTGGGAACAGATTAAGAAGCTCGACGAACGACTCAAAGGGATGTCATCAGATGACAAGAACAACCCAAGTAGTATATCGAGAGGTG GCACTTGGTCACATTCTTTGTTTTCACAACAAACTAATGCTACTGACCTTGAGGCTGCTTTGACATTTTCCTCACCTATGAAGAAAGGAAATCGAATATC TGGAAAGAAAGATTGGGGATCCGAGGATGATTTAGTTCCAAAACAGGAGGAGACATCAGCAGAAGAGGTGAAAACTGTGCTGCATTGTTCACAAAGTGAG AAAGCTCCAAAAGATGCACCAGTGAACGTGATGGATCACCATGCTGGTCTGCCACCTCATCCATTAGTATCTCCAGGGGAGTATCTGAAGCTGATGAGAC GGATAGAGAGGCTGGAGAGGGCTAGGAACAAGATCCCCGAGAATGTTTCGACTACTACTACTACAGCAGAAGAGGAAATGCACCTGTTGAAGGCAATTCA AGATCAGCTTGGTGGGATACAGACTGAACTCAGGACTAGGAAAGCTCAGAGATCGGATGAACCTTGTCTTGATGTTCTTCAGGAGGTATGGCTTCCTCTC TTACAACTTGTCCTTTTCACACACTAG
AA sequence Show only first row Show all	>Lus10010774 pacid=23147696 polypeptide=Lus10010774 locus=Lus10010774.g ID=Lus10010774.BGIv1.0 annot-version=v1.0 MGERHHALMLPETDAITLKEALQVQQDILQKLYRELDDEREAAASAASEAMSMILRLQGEKAALKMEANQYKRMAEEKMTHAEETLDLCDDLMYQKEMEI ASLEFQLQSYRNRLVGMGLNDVEVPEHDQQQLPHHTNVRRLNSLPQLTMVDFGHKKIGGFERKLHPQVDLATASSTIDEEAEFQEIHELEKKLVAPATHG DINSCWEQIKKLDERLKGMSSDDKNNPSSISRGGTWSHSLFSQQTNATDLEAALTFSSPMKKGNRISGKKDWGSEDDLVPKQEETSAEEVKTVLHCSQSE KAPKDAPVNVMDHHAGLPPHPLVSPGEYLKLMRRIERLERARNKIPENVSTTTTTAEEEMHLLKAIQDQLGGIQTELRTRKAQRSDEPCLDVLQEVWLPL LQLVLFTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57830			Protein of unknown function, D...		Lus10010774 [exp]	0	1
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	2.2	0.9516
AT2G21300			ATP binding microtubule motor ...		Lus10031086 [exp]	2.4	0.9472
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10036621 [exp]	3.9	0.9496
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10004048 [exp]	4.8	0.9305
AT3G59110			Protein kinase superfamily pro...		Lus10029788 [exp]	5.1	0.9358
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10035838 [exp]	5.8	0.9332
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10007296 [exp]	6.3	0.9512
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10008770 [exp]	8.1	0.9010
AT4G35240			Protein of unknown function (D...		Lus10016004 [exp]	8.8	0.9426
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	11.3	0.9475

Compare expression of checked genes

Lus10010774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.